DreALTA0010971-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000100666 | ep300a
Description
E1A binding protein p300 a [Source:ZFIN;Acc:ZDB-GENE-080403-16]
Coordinates
chr12:18814102-18815583:-
Coord C1 exon
chr12:18815473-18815583
Coord A exon
NA
Coord C2 exon
chr12:18814102-18814158
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
ATTTTCCTGAATATTTCTAGATC
3' ss Score
6.54
Exon sequences
Seq C1 exon
TTCACCAAAATATGGGCTTCTTGCTGACAGGTACCACTTCTGCGAGAAGTGTTTCAATGAGATCCAGGGTGAAACCGTGTCCTTGGGAGACGATCCATCCCAACCTCAAAC
Seq A exon
NA
Seq C2 exon
ATCAATCAACAAAGATCAGTTTGAAAAGAAGAAAAATGACACACTTGACCCTGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100666-25-29,25-28-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.204
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGATCCAGGGTGAAACCG
R:
AGCTCAGGGTCAAGTGTGTCA
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]