DreALTA0011286-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000077666 | evi5a
Description
ecotropic viral integration site 5a [Source:ZFIN;Acc:ZDB-GENE-110218-2]
Coordinates
chr2:10940961-10944799:+
Coord C1 exon
chr2:10940961-10941098
Coord A exon
NA
Coord C2 exon
chr2:10944659-10944799
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GAGTATCAGTTTGTCAGCAGGTG
3' ss Score
0.72
Exon sequences
Seq C1 exon
ATCAGCGCTGCACCTGATGAGCACAGTGTGTTGTACCTGCGGACAGAGCTAATCAGCTGTAGACTGAGGGAAGCAGAGGCACTTACTGAACTCAAACAGCTCAAAAATCACATTAAAGACATGGATGAGAAATTGCAG
Seq A exon
NA
Seq C2 exon
GTGCTGTGTGGAGGTCAACAGAGGGTCAGCAGCACACAGAATGACCTGCAGGTGGAGCTGCTGAGCACCAGACTGAAGGAAACACTCACCCAGGCCATACTAAAGGAGAGCCGTCATGCACTGATGCAGCTGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077666-13-14,13-13,13-12-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF054676=Herpes_U47=PU(13.0=26.1)
A:
NA
C2:
PF054676=Herpes_U47=FE(51.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACTGAGGGAAGCAGAGGC
R:
CTGACCCTCTGTTGACCTCCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]