DreEX0030971 @ danRer10
Exon Skipping
Gene
ENSDARG00000077666 | evi5a
Description
ecotropic viral integration site 5a [Source:ZFIN;Acc:ZDB-GENE-110218-2]
Coordinates
chr2:10940961-10952128:+
Coord C1 exon
chr2:10940961-10941098
Coord A exon
chr2:10944656-10944799
Coord C2 exon
chr2:10951480-10952128
Length
144 bp
Sequences
Splice sites
3' ss Seq
GATGAGTATCAGTTTGTCAGCAG
3' ss Score
-6.46
5' ss Seq
CAGGTGGAA
5' ss Score
1.62
Exon sequences
Seq C1 exon
ATCAGCGCTGCACCTGATGAGCACAGTGTGTTGTACCTGCGGACAGAGCTAATCAGCTGTAGACTGAGGGAAGCAGAGGCACTTACTGAACTCAAACAGCTCAAAAATCACATTAAAGACATGGATGAGAAATTGCAG
Seq A exon
CAGGTGCTGTGTGGAGGTCAACAGAGGGTCAGCAGCACACAGAATGACCTGCAGGTGGAGCTGCTGAGCACCAGACTGAAGGAAACACTCACCCAGGCCATACTAAAGGAGAGCCGTCATGCACTGATGCAGCTGCAGACACAG
Seq C2 exon
AATGAAATTCACAGAAACCAACTCAAGCGAACTGAAGCGCATGTGAGCAGCCAGCGAGATCATCTACAGGAACTGACATCACACAACAAAGATCTGCACAGCCAATTACAGCAGATCAGATGCCACTTTTTAGCTGTTCAAAACAAGGTAACACCATACCTGACATCATCGGCTTTCTGACAGTCAGGAGGCGTCTAATTACAGTGTCATTTACCCTTGCTGACTTCCCTCAGGTTAAATTAATCCTATGCCGTGAGCAACATTAAGTCTCTTTGTCAAAGCTTTCAGTACAGTTAAAGTGATAGTCCACCCAAAACAGAATATTCTGGCATCATTTACTAACCCTTTTCTTGTTTCAAACCATTTTACTCAAAAGAAGATAATTTGAGGAATGATGAAAACCAGTAACCATTTGATTGCCATAGTGTTTGTTTTTCTTACTATGGAAGTCAATGAATACTGTTTTTTTTTTTTTTTCAAAATACTGTATTTTGTATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077666_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.083 C2=0.531
Domain overlap (PFAM):
C1:
PF054676=Herpes_U47=PU(13.0=26.1)
A:
PF054676=Herpes_U47=FE(51.1=100)
C2:
PF054676=Herpes_U47=PD(32.6=61.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGATGAGCACAGTGTGT
R:
TCTGCTGTAATTGGCTGTGCA
Band lengths:
243-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]