DreALTA0012320-4/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8858063-8858356:+
Coord C1 exon
chr2:8858063-8858139
Coord A exon
chr2:8858216-8858283
Coord C2 exon
chr2:8858284-8858356
Length
68 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
GTCATCCTTTTCCACTTAAGCTG
3' ss Score
5.58
Exon sequences
Seq C1 exon
TGGACCCCCAGCACCATACCAACCTCAAGGCTGGGGCAATGGATACCCCCACTGGCAGCAAGGACAGCCTGATCCTA
Seq A exon
CTGTTTGTTCCCCAGATAAAGCAGCGGCTGATGCTAATGCTGCAGCATGGGCTGCCTATTATTCTCAG
Seq C2 exon
TACCAGCAGCAGCCTCAGGGTCCAATGACACCCACCTCGGCAGCCCCAGGCACAACCCAAGCCAATGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248-15-18,15-17,15-16,15-15-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCACCATACCAACCTCA
R:
TTGTCCATTGGCTTGGGTTGT
Band lengths:
143-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]