DreALTA0012320-3/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8858063-8858356:+
Coord C1 exon
chr2:8858063-8858139
Coord A exon
chr2:8858231-8858283
Coord C2 exon
chr2:8858284-8858356
Length
53 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
TTAAGCTGTTTGTTCCCCAGATA
3' ss Score
9.25
Exon sequences
Seq C1 exon
TGGACCCCCAGCACCATACCAACCTCAAGGCTGGGGCAATGGATACCCCCACTGGCAGCAAGGACAGCCTGATCCTA
Seq A exon
ATAAAGCAGCGGCTGATGCTAATGCTGCAGCATGGGCTGCCTATTATTCTCAG
Seq C2 exon
TACCAGCAGCAGCCTCAGGGTCCAATGACACCCACCTCGGCAGCCCCAGGCACAACCCAAGCCAATGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248-15-18,15-17,15-16,15-15-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCATACCAACCTCAAGGC
R:
TTGTCCATTGGCTTGGGTTGT
Band lengths:
139-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]