HsaALTA1039848-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77956572-77960263:-
Coord C1 exon
chr1:77960184-77960263
Coord A exon
chr1:77956692-77956700
Coord C2 exon
chr1:77956572-77956691
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
TGAACTTTCATTTATTTTAGCTA
3' ss Score
8.44
Exon sequences
Seq C1 exon
TGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCATATCCACACTGGCAGCAGCAGGCTCCTCCTGATCCAG
Seq A exon
CTAAGGCAG
Seq C2 exon
GAACGGATCCAAATTCAGCAGCTTGGGCTGCTTATTACGCTCACTATTATCAACAGCAAGCACAGCCACCACCAGCAGCCCCTGCAGGTGCACCAACTACAACTCAAACTAATGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-31-34,31-33,31-32-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.805
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATATCCACACTGGCAGCAGC
R:
TGGCTGTGCTTGCTGTTGATA
Band lengths:
107-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains