BtaALTA0012241-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66980432-66984190:+
Coord C1 exon
chr3:66980432-66980511
Coord A exon
chr3:66984062-66984070
Coord C2 exon
chr3:66984071-66984190
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TATAACTTTGTTTATTCTAGCTA
3' ss Score
8.25
Exon sequences
Seq C1 exon
TGGCCCTCCAGCCCCTTATGCTCCCCAAGGGTGGGGAAATGCATACCCACATTGGCAGCAACAAGCCCCTCCAGATCCAG
Seq A exon
CTAAAACAG
Seq C2 exon
GAACGGATCCAAATTCAGCAGCTTGGGCTGCTTATTATGCTCACTATTACCAGCAACAAGCACAGCCACCACCTGCAGCTCCTGCTGGTGCACCAACTACAACCCAAACCAATGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926-23-24,23-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCACATTGGCAGCAACAA
R:
GGCTGTGCTTGTTGCTGGTAA
Band lengths:
104-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development