DreALTA0013736-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000075928 | hivep3a
Description
human immunodeficiency virus type I enhancer binding protein 3a [Source:ZFIN;Acc:ZDB-GENE-081029-2]
Coordinates
chr19:15424393-15430998:-
Coord C1 exon
chr19:15426881-15430998
Coord A exon
NA
Coord C2 exon
chr19:15424393-15424532
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
CGTGTCTCTCTCGAGTGTAGGTA
3' ss Score
6.84
Exon sequences
Seq C1 exon
GATCTGATTCAGTAAGTGTTGGAGCAACCAAACGTGTCCTGTCGCCCACAAGCAGTAATGAACTCAACCCAGAAAGTGAACAACAGCAGAAACGAGTAAAAGAGGAGGAAGAAAACCAGGAAAATGAAAGGAGAGATGATAAGGTTTTGATTGAATTCAAAAAGGAGGAAATACTGGGTGAGCAAAGTGTCATCTTCCCAACTGAACACAAAGATCCCCCATTTCAGACTCTTAACACGAATCTAACTTTTAGCTGGTGCTTTCTAAACTACATAAAGCCAAATCCATCCATACAGAGTGAACAACAAAACTCAGTCTATTCTTCATGGTGTACAAGTACCCGCAATCCAAACCCTCCTGGCCTAACAAGCAAGGAAATGCTTTCCCTGTTGCAATGCAGGCAGAGACATGAAACACTTCTCTACACCATGGCATCCATGTCACCTTCTTTGGATGTGAAACAAGAGACACCTGACTCCCAAAAGCCTAACGTGACTGAG
Seq A exon
NA
Seq C2 exon
GTACATGCCGCTCAGCTCACAGAACCGAAAGAAGCCCAGCAAGCTGAGTTGACGGAGGTAGAAACAAAAACAACGGAGGAGAAGGAAGACCAGTTATCTACCTCCAAATGCAGCTCACGGGTACAGATTTGTGAGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075928-4-6,4-5,4-4-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=NA C2=0.702
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=2.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCTGACTCCCAAAAGCC
R:
TCTACCTCCGTCAACTCAGCT
Band lengths:
96-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]