DreINT0078042 @ danRer10
Intron Retention
Gene
ENSDARG00000075928 | hivep3a
Description
human immunodeficiency virus type I enhancer binding protein 3a [Source:ZFIN;Acc:ZDB-GENE-081029-2]
Coordinates
chr19:15424393-15430998:-
Coord C1 exon
chr19:15426881-15430998
Coord A exon
chr19:15424533-15426880
Coord C2 exon
chr19:15424393-15424532
Length
2348 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
CGTGTCTCTCTCGAGTGTAGGTA
3' ss Score
6.84
Exon sequences
Seq C1 exon
AATTCCAATCTCTGAAGTGGATCATCTGTCAACCATATTTGGAACATAAAGCATCTGCAGAACACAGAAATTGAGAACCAGACAGAGCATTCATGGAAAAGCCTAGCTATTTTGGATTTCTAAGAACAAGAAAGAACAAGAAACAGGACAGACAAAAGTTTTCACTTTAACTGATAAGTTGTAGCTGTGTTTTATATAATTCATTGGAAGAAGCTCTTCTACCATCAAGCAATAATGCATACAGAACATTTCAGCTATGACCAACATGTAAAACCCTTGCGTATGTTGAATGGAACAAGGTATTATGCAGTTCTCTGAATTCATTGAATCAATTGGTCATTCATACAGTCTGGAATAAATAGCACCTTAGGCTTTCATCCCATTTTATGGAGGCTTTGCATAGCCAGGCGACCACTGGGGAGCAATCTGGAGGTTTAGCAAAGCAGAATGAGACCCCAGTGGATAACCCTAAGCCACAGTATCATGAAGAGAAAAAGGTTGTCACCCAGGTGCACCATGCACAGCAGCGGAAACATCTTAATATTGAAAGAAAACGGCTCCGATTACAGAGGAAATCTCTTCAGGAGAGAGATGTTGTTGAAGAGGGAAAGCCACCGAGGGCATCAGGTAGTTCTGAACATCTCAATGCTAACATGAGCCAGGCTAGAGAAATGCCATCTGGAGCTTCATCCTCAGCAGTATCAGCTAAACCCTCTTGTTCCATGGAAGAGGTCTTGGAAGGTACACCAAGACAAAAGCGTGAGCGCAAACCTCAAAAGCCAGGAAAGTATGTGTGTTCATACTGTGGCCGTGCTTGTGCTAAGCCCAGTGTGCTTCAGAAACACATTCGATCCCACACTGGAGAGAGGCCTTACCCTTGTGCACCATGTGGGTTCTCCTTCAAGACTAAAAGTAACCTTTACAAGCACCGAAAGTCCCACACTCATAGGGTGAAGGCTGGTCTGACTGCAGACAGGGAGGGACCAGGTATAAGTTGTTCAGAGGAACCACTTACAGATTCAGATGAAGAAAGCCAACCATCTTCTTATTTAGAAAAACAAAGGATGTCAGTTCAAAACTCAAGTGCTACAGAAAGGTGCTCTGAGGGTCAGTTACAGGAAATAGAGGACTCTCATGCAGTTAAGAAGAGACTTGCAATGCGACTTAGCAGAGGAAGACGTACACCTTTAGGATCATCTGATGAAGCATCCTCATCATTTGGTCAAAGTAGCAAAGGTAGCACAGAGTCCGGCTATTTCTCTCGATCTGAGAGCACAGAAGTCTCTCAAGATAGTCCACCAAACACAAGCGCAAAAAGCTATGCAGAAGTCATCCTTGGAAAGTTTGGTCGCCTTGGTCATTTGCAGAGGACTTCTCATCAACAACATGCCCATCCTGCTGGACAAGAAGGGAAAAGAATTCCATTTAACGTTCCCAAAAAGCAAGTCATTGACCACATCACTAAACTCATCACCATAAATGAGGCTGTTGTTGACACCAGTAAGATTGACAGTGTCAAGCCCAGAAGGTTCTCACTTTCTCGGAGAAGCAGCACAGAATTGAAAGTAGTCTCTTCCAAAGAGCCATTTCTTCACAGTCCAAAAGAAATAGACATAAGTGCAAAAAGTAGTGGTTCCATCACTCTTGGTGTACCATGTGAGAAATTTCAACATCATTCTCTTAGTATCCCACAAACTGAATCAACATCCACTGCTCCTCTTTTGAGAAGTCACTCCATGCCCTCAGATGCAAGTACTAGTGACGTGTCTGAAACTTCCCGTAGCCTTCGCCTTAGCCAATCCTTTGATGACCCGCAACCAATTCAGAATCGGCGCCATGGAATGCTAAGACGACAGCCTGCAATTGAATTGCCAATTGGCGCTGAATTAACAATGGAGGAACAATCCTATTCCACCTCATCATTTCATCACCCAGTTACTACAATGCCTGATCCCAGCCAGAAACAAGAGCAATTTGAGTGCGGTGCTTGTCGTATTGTTTGTAATGACGTGGAGAGATATCAAAAACACAAACAACACTGTTGCACAGTTCATATTTCTCAACAATCTGAAATTCCTGTTTATCAAGTAGATGAATCCACAAGAACATTTACATCCCGTTCTGGTGCTTTTGCATTTAGAAAAAGAAGAAAAGAAGAGAGTATTGAATTTGAAGATCCTTCTTTACCCTCAGTCTCTTATATACCACTGCGAGGGTATGCACCATCTTGTGAACAACCTATTAAAAGGACACATGAACTAGGTCAAGAATACTGCACAGAAGGTTCTTTGAAAGGAATATCTGTCATTCAGCATACCAGTTCATTTGAGAAACATGATAATAGTAAAACGGACGAACCCTCTCACACTCATGGTGTTTCCCACACTTCTCCTCATCCACAGACAAAGCAGCAAGCAACTAAACTATCCTTCCGTAAACTTGTACGCCAACAAAATGTCCAGGTACCAGAGATTCTGGTCACAGAAGATTCAAACACGGAAGCCATGGCAGTCTCACCCCCTCCGATTGTCCCTAAAATGAAGGACACTGAAAAAGTCAGTGAGTTCCAGTGGCCTCAGAGAAGTCCAACTTTGGCCCAACTTCCAATTGAGAAGTTGCCACCTAAAAAGAAACGTCTTCGTCTTGCAGAAGCAGCACAGTCTTCAGGGGATTCAAGCTTTGAATCAATGTCCCTGCCTCACAGTCCAAGTCAAGACAGTTGCACATCTCACAATTCCAGTAGATCAACTTCTTTTGAAGAAGCTGGAAAAGCTGATGCAGATTTGACACCAACTAGGAGATCAAGAGCCACTCATACTTTGACAGTTCCCATAAATTCTCATAGAGAAATGAGGCGCTCTGCATCTGAGCAGGCACCTCATATACCTCAAACTGCTAACCTTATTACAGAGATTCGCAGTAAATCATTTGACTATAGCAGTTTGTCTCCAGATCGGACCCCAGCAGGATGGAAAGAAAGGCGGAAATGCCTTCTATTGAGGCACAGTGCCGTGAGGGAACCTGAGGAGGAAGACCAAACTACCAAAGTCTTCAACACCAGCTCTCCCACTTGTAGGACTAGCACGTCACCTAGCCATAGCCCAGTCACCTCCTACAGCCCATCCACTCATCACGTGTCTTCAAGCAATACTGTACATTCATTTGGTGAGAAGCAGATCATGAAATCACAGGATGTTTTATCAGAGAATACCCAGCTGAGTACATTGCAGCTGACCCCAGTGATTCATACTGACCACCCCACTACCGTGGGAAGTCTGATTTGTCCATCAGGTGCTGCCAGAGCTCATTATTCTTCAATGTCAACAGGACTCAAGCTTGAAATTCCCATGGAAAAGGACCAACCATACATCACTCATTGTCACCAGCATCAGAATATTGGTTTTGATGTTACTTCAAACCCAGAAGTACTAAGACCTTTACCAGCCCAGAGTATTCCAGTCCGTCTTAATTCACACCTTCCATATCATGCAGGCTCTATTTATACAACAGTTTCACAAACATTTTTTTCAAGGCCCCAGGAACCTTGTTGCTCTGGAGTCAGTTCAGTTGCAGTGGTCTCAAAGTATGAAATTATGGATCAACAACCAGATTCTGAAAGATCTGATTCAGTAAGTGTTGGAGCAACCAAACGTGTCCTGTCGCCCACAAGCAGTAATGAACTCAACCCAGAAAGTGAACAACAGCAGAAACGAGTAAAAGAGGAGGAAGAAAACCAGGAAAATGAAAGGAGAGATGATAAGGTTTTGATTGAATTCAAAAAGGAGGAAATACTGGGTGAGCAAAGTGTCATCTTCCCAACTGAACACAAAGATCCCCCATTTCAGACTCTTAACACGAATCTAACTTTTAGCTGGTGCTTTCTAAACTACATAAAGCCAAATCCATCCATACAGAGTGAACAACAAAACTCAGTCTATTCTTCATGGTGTACAAGTACCCGCAATCCAAACCCTCCTGGCCTAACAAGCAAGGAAATGCTTTCCCTGTTGCAATGCAGGCAGAGACATGAAACACTTCTCTACACCATGGCATCCATGTCACCTTCTTTGGATGTGAAACAAGAGACACCTGACTCCCAAAAGCCTAACGTGACTGAG
Seq A exon
GTAAATGAAACAAATCTTGTCTTTATTAAGTCAATGATTTAGGCTCTGCTTAGATTCAGCTTTACACTGGAACTAGCTGAATAACTTCTGGAATGGCCATTTCTGTCATTCTGACCATTTGCATATAAGACGTCATAACGTCATATTGTCATGTCATATTTACATTCACATTCATTCATAGCACTTAATATGTTGTTTTCAAAGACATGTCGGATGAAAAGTTAGGGTTTAACTATAGAAAGTGATGTTTTTGTTAGCAGGAAGTTGGTAATCAACTGATGCATTCATATAAGGCAAGGGAATAAGTAATAAAGGCTTAAATGCATGTGGTCAATTTGACCGTTATGGTAATTCAAGGTATAAATACTCAGAAGTCTTTTGTGTTTCATATTTTTTATAATATTTCAATGTTAGAAATAAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATTATCACCCGAGTAGCAGTGAGATGTGGCTGTATATTGGCACTGGTGGAAGGCTTGCATTGGCATGAGGCCGCAGTGTCCTACCAGTGACGATATAGAGCCACATCGCATTGCTACGAGTATGATATTGCATTTATACAACAGTTCAAAGGCATAACTGTGTATATAAAAAGAAAGTCAAACAAAGAGTCTCAAAATCTACTTTCTTCGGCCATTCCTTTACATCTGCAGCTGATGTCAGAACAGCAGAAACCGTTGCTACATCAACAACATCAACGTAGAGCTAGTATTTGAATGATTCTCAAGCATAGTGTTTAAAGTAATGAAAAAATAAATTATTTTAGTTACATTTTAAGATTACCCTGTATTTTCCCTGTATTATATCCCTGTAATTATCCCTGTAATTTCCCTGTATTTCTCTGTTGCAATCAGGAGATCACAATATTTATGTCTAAAAACGTCAAAGCAGCACCAACACTAGCAGATTACCATTGTGTTGTGAAATTATGCTGTTTTTTTTCCCTCTAAGGGCTTATTATGCTGTCTCTGTCACCATTTTGTAGATGAACAATGTCAACCATCTTTGGTCTGCTCAATGACAGGCTGATGGCCGCCGACGTGCTTTCTCTCAGAAATTATAAGATTTAAAATAGGCACTATCCTTATAAGTAAACTGCATAGTTGCAATCTAAACAACTACATTTTTGATTAAAAATGCCTCAAAAGTACATTATGTTGTGCATATTTGTCAAACTGTAAAGTGTCCTCTGCTTGCCGGTGTATGTAGGCTGAGTAATACACAAGGGTAAAGGGTTAAGAGGCTGGACGAGTGCAGCAGAATATCGCATGACTATCTGACAATCAGATTTAAGAACCCGACAGAACTGTTTTATATATATATATATATATATATATATACAACAGTTCTGTCTGGTTCTCAAATCTGATTGGCTGATAGCCGTGCAATATTATGCAATATCAGAACTCCTACAGCCTCTTTACCCTTTGTGTATTACTCCGCCCACATACAGCCAGCAAAAAGCAGACACTACAGATCTAAAGTTTAAAAGATGCTTGCTCAACTGTTTTAACTGTCAGTTTATGATTTGAATCCAATGTGGAAGAAAGTTGTTGCACATACAAAAGGGTTTTTGAAACTCTCCGTGTTTGATTTTGTTTTTATATTCACAGTTATGCCATCAAACTGTTGTATAAACGTAATATCACACTCGTATAAGTGCGATATGGCTGTATATCGGCACTGGTGCGGCCTCGTGCCATCGCACGCCTCCCACCAGTGCCGAAATACAGCCATATCGCACTGCTACTCGTGTGATATTGCTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCACTTAAGAAAAGTTATATCACCAAATTAAAAAATGGTTGAAATGACCAAATTAAAAAATGACCACCTTAGTCGTTCCAGTGTTAAGCTTTTGTGTCTTGGAAGAAAGTAGAAGGTTTCTAGCTGGTTATTCTGCTGCCATGTTCTCAAACCACCTTGTCCACTTGAAAGTGTTTTTTCAGCAGGGAGAATAACTAATATGCTAGTTGACACTGTTGTAATTAAAGTGGGGGCTTATTTTTGTCTAGGTCTGGCTTATTGTCATTTCTACATTTTTTCTTGGAAGTCATTAAACTTGGCAAGACATTGTAAAGTAAATCAGTTTTAATGCTATCTGGAAAATGTTGAATGAGACTTCCCCCCTCATCTCTGTCTCCCTGGGCACCCGGAATAGGGTTGGTGAACTTGCCCGTGTCTCTCTCGAGTGTAG
Seq C2 exon
GTACATGCCGCTCAGCTCACAGAACCGAAAGAAGCCCAGCAAGCTGAGTTGACGGAGGTAGAAACAAAAACAACGGAGGAGAAGGAAGACCAGTTATCTACCTCCAAATGCAGCTCACGGGTACAGATTTGTGAGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075928:ENSDART00000143480:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=NA C2=0.702
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=2.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]