GgaINT0137472 @ galGal4
Intron Retention
Gene
ENSGALG00000027365 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr23:862644-870124:+
Coord C1 exon
chr23:862644-866185
Coord A exon
chr23:866186-869978
Coord C2 exon
chr23:869979-870124
Length
3793 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTGCTCTTTTGGGGAGATAGGTT
3' ss Score
-0.15
Exon sequences
Seq C1 exon
CGTTGACATCCCATGGTGAAAAAATGAAGCCCGAACAATCATTGTTGTCACTTCAGCAATCCCACAGTGCCACAGAGACAGTGCCTCTCCTAAGAAGCCACTCAATGCCTTCTGCTGCATGCACTATAAGCTCCCCACACACCTTTAGAGGTAGCTATTCATTTGATGATCACATCATGGAGCCTGAAGTCTTAAGCCGCAGTCAAGCATTTTCTTCTCATCCTCGAATGCTAAAACGACAACCAGCTATCGAGCTACCTTTGGGAGTAGAATATGTCACGGAGGAGGTTAGCTCTGCGAGCAAAGAAACTGTTTCCAAACCTCCAGAGGAGCCTGAAACCAAGGAAAGCGATCTTACCAAAAAATCACGGAAGGGGCCGAAAGTTAAAGGGTTCATGTATGAATGTAATGTATGTGGTGCTCGGTATAAGAAAAGGGATAATTATGAAGCCCATAAGAAATACTACTGTTCAGAACTGCAGCTCTCAAAGCCACGTTCTTCCACTTCCCATACCTCTTCAGAGACTGAGAAAAATGTCATGGATCCTGAGACATGGCCCCAGGTGATGCATTACAAGCTAGGGAGCACTTTGGAGCTTACCCCGCTCCGAAAACGGCGAAAAGAGAAGAGCCTGGGTGATGATGAGGACCCTCCAGCTTTTGAGCTGTCGGATACTCCCTCCTCCAGCACTGGGCCAGGGGCTCAGTTTGCAAACCTGGCATCATCTGATGTTGCTTTAAACCTAACCCGTGAATCCATGAAGTCACCAGCAGACCCAGGGAAATCTGCACCTTCTGATGTCAGTGCCAGCTTCCACTCCAGGAATACCAAACTGGTTTCGAGCACGGAGGGCAAAGAGAGAAGGACAACCTCAAAGGAGATCTCTGTCATCCAGCACACGAGCTCCTTTGAGAAGTCCGACTCCATCGAGCAGGTGAGCGGCTTGGAGGGCGAAGAGAAGCCCACACCGCAGTACCCATCTCAGCCAACCACGCAGCACAGCCGCCCACATCACTCCCTGCAGCCCAAGCTGGTGCGACAGCCCAACATCCAGGTCCCAGAGATTCTGGTCACGGAAGAGCCCGACAGACCAGAAACGGAGCCAGAGCCTCCTCCAAAAGAGCCAGAAAAAACAGAGGAATTTCAATGGCCACAGAGAAGCCAAACGCTTTCTCAGCTCCCTGCAGAGAAACTCCCACCAAAAAAGAAGAGGCTGCGGCTGGCAGAAATGGCTCAGTCCTCTGGAGAGTCCAGCTTCGAGTCGGTCTCTCTCACCAGAAGCCCGAGCCAGGAGAGCAGTGTATCCCATGGCTCCAGCCATTCTGTGTCATTCGATCGGGAAGATCACAGCAAAACAGAGCCTGGCAGCCAGCCTCCCGAATCCCACTCCAAGCCTCCAGGTGTTGGCTCCCACATGTTGATGGTCCCAAGCCACCACCACCACCATTCCAGGGAGATGCGGAGATCTGCCTCCGAGCAGACACCCAATGTGTCCCATGTTTCCCAGATGTCGGAGACCCGCAGCAAGTCCTTTGACTATGGGAGCTTGTCCTCCACGCCTGCCTCCACTCCCGGCCCCTCCACCTCCTCGGCTCCCCAGGAGAGGAGGAAATGCTTTCTTGTGAGGCAAGCATCCCTCACCAGGCATCCAGAGCACGAGCCAGACCCAGCCCCAGCAGGCCGACCAGAGGCAGAAGACCCAGTTCCTTCCTTGAGCAAATCTCCCTCGACAAGTTTGCCCCATCAGCCGCCATCTTCATCCCCTTTGCCCTCTCACGGTACCTACCCAAGCGATAAGAGCCAGCCAAAAGACAGCCCCCAGCCTGCATATACCCAGCCCTACACAGAAGCCCTGCAGGTCTTCCACCCCGTCCCCCAGCTAACACTGCACGAAAAGCATTTCCTCTCCCCACAAGTTTCCATCTTCCCCTACCAGCCCCTCCTGCCCCAGCCGGGGCAGCCTGCAGAGCTCTTTGCTGCACACACCATGTCCGATCTCCTCTCCGCGCAGCTCACCGTGCCCCAGCTTCCCCCTTCCATCTTCCAGACCCCTCCGCTGCCCCTCCAGCAGACGTTGCTGCACCCAGGCCCCCTGCACCTCGCTCCACCGCTGATTCCGCACCCCACTGAGGTACCCTTCAGGCAGCACCCCTCCTTCCTGCCGGTGCACTACCCCAGCTCCTCGCCCATCTCCTCTGCCTTTTTCCTGCCTCTTCAGTCTCAGTTTGCTCTCCAGCTGCCAGAAGCTGGGGGACATTTACCGCAGCTCAAATCCAGCTTATTCCCAGCAGCAGGGACCTCCAGCCTTTCCCCGTGCACAGAATACAGCTCGGACACTCGGTTGTACCCCCTGACCCGCACAACAAGTCCTTCAGTGCCCGTGTCCACAGCTCAGCTCATCGTCCCCACACGGTCGGACCCTGTGGTGTCCCTCGTGGTCCCCGTCCGCATTCAGACCAACATGCCGTCCTACGGGAGCGCCATGTACACCACGCTTTCCCAGATCCTGGTCACTCAATCCCAGTGCAGTTCCTCTTCTATCGTTCTCCCCAAATTCGATGATTGCCAACCCAAGGGCACCCTGGTCTGCAGTGCTGATGTGCATGGCCTTGGGTTTGATCTAGCACAGATGATCACAGAGGAGCAAAGGATTTTCCAGAGCCCATATCTGAGGGTGCCCTTACCCCTACCGGAGCGAAAGGGCTGCATCCCGCTCACCTCCCCAGCAGACAGCGTCCTCGGGCTGGAGGGAGGCCCATCCACCGTTGGTGGAAGCAAGAGGATGCTCTCTCCAGCGGGCAGTTTGGAGCTGACGATGGAAACGCAGCAGCAGAAAAGAGTGAAAGAGGAGGAGGTGTCAGAAGCAGAGGAGAAGTTGGAAGTGGTGAAGCCACCCAGTGCAATAGAGGAAGGGAAAAAGCAGGATAAAGCTCACTTTCTTACCGAAAGCCAAGGCAGGGTTGAGGTTGAAACACCACCTAGTTTGTCCTTAGAGCAGTCGGAGCTAAAGGAAACCCCGAGTACTTTGCAACAAGCTGTGTCCCGGTCCGGTTCTCCAAGCTTTGAGGCGCTGGAGGAGTATCAGCAGCCAGCTGGCAAGCAGCCCCTTGGCAAGGCACCTTTACAAAGCGTGAAGAAAGAAGACTCCAAAGAGCCAGTGGAGCAGCCTCCACCAAGCCCTCCAAGCCCTGCACCTCTGTCCGAGGTCCCTTCAAGTGCAATGAAGTCTCGAGAAGGTACGGATATGAAGAAGGTACTTCAGTTCCCCAGTCTCCACACAACCACTAATGTCAGTTGGTGCTATTTAAACTACATAAAGCCAAATCACATCCAGCAAGTCGACCGGCGGTCTTCAGTGTATGCCAGCTGGTGTATTAGCTTGTATAACCCCAACCTTCCGGGTATATCCACTAAAGTCGCCCTGTCCCTCCTGAGGTCCAAGCAGAAGGTGAGCAGGGAAACCTACACCATGGCTACTGCTCCACGGCCAGAGGCAGGCAGGCTTGTCCCGTCCAGCTCCAGGAAGCCCAAAATGACAGAG
Seq A exon
GTAATGCAATCCTATATATTTCTCCTCATCTATTTGGATACATGGGAAGAGGGGGACGAGGGATGGGGAATTGCTGCTGTTAGTTTAATAGGAATTTGTTCATCCTTTTCTCAGTCTGGTAAGTTCTCAGTGAGACTTATAGAGTGAAGAAGCTAACACCCACTAGAATCCCCCCCAAAATGATAATAAATAAAAGGCAACCCTACTCCAAAGCAATGTGCCCTATTTCTGTCCTCCAGTTTCTACTTGCCTTGTAATCAAAAGAGCATGTAGGAATCACCACCGCACCATGAACCGCCACTGCTTGAGCACAAAGGATTAGACTTGATTTGCATTTCTGTCTCGATATTTCAAATAGCTTTACAACATTTTTTTTTTAAATAAATGCTGTTATAATTCCCTACATTTTGCATGTTATAAATGAAAAAGGATTACCTTGGGGAAATGGGATTCTGTCTGGTTGTGCATCTACTGATCTCACGTTAATGAACATGGAGAGGCATGCTTAAAAGTATTTAAAAATATTAAAGGGAGATTTGCAAGTGTATTTAGGCTCCCAAAGAAGTGTATAGGCATGCAGTGACATTTATAAAAGTGCCTCAGTAGGTTAGACATGGAGTCTTGTGAAAACACCCATGTCTTTTAGCCCATGTAGTTAATGTCCTTAGCTGTCTGCCTGCTTTTCTGGATATCTAAGGATATTTTATAGGTTGTCTTTGGAATTAAGAGGAGCAAGGTCAATGGCTTCGTGCAGGCAGAGCTCGCCAAAGCCATTGGCCACATGGGTGCAGGAGTCCTTAAGATGCTTCTGCTGCCTGGAGTTTTGTATCTTGCATTGAGGCCAGATTTTTTTCTCTCTCAGTTAATGCTGAACCATACAGATCCCTTTAATCCAGGTCATGTTCATGTAGATTAGCAAACAGAATTGCTCGAAAGACTTTGCAATTTGATATTCATCTCAAGTCAATTTATATTGATGGATTATTCATTTTATTTCTGAATCATGAAATGAACTCTGAATATTAAATTTATCGTAATCGCTGCTGCAGCTGCTGCTTATAAATATGTCTTAAAATGCACAGTAAAGTCGCTGTGATTCAATAAATCTTTATTTCCATTCAGCATTTCCATCATTCTCCTGCAGAAATCCAAAAGGCAGATTTTCTTGGAGCCTGGGGGCAGATAATTAGCTGTGCGGTGCAATAACCGCACTAATGCTTGATATTTATGCACTCTTTTTGCAGTGGATTTTATCTGGAGGGTGTTGTACCATCCTTGGTTCCATTCTCTAATAGAAGTGCCTGTGCTCCTTTGAACTTTGCTCTTTGGCGTGGTGCTAAAATGAACACAAAGGGTTGTGTTTCAGAAATACGAGAGACCCTCATATCCCAAAGTTAAAGTTCAGACCTACACAGGAGCGGCTCAGCCCTTACCCACCAGAACACCTATTTCACTGCCTGCATTTACTCAAAGGCTGACAAACCTTTTAGACAAAACCCTACAAAAGTTGCAGTTTTCACAGTGCAGTTTGCAAAAGCAAGGGCTTGTCCTGCAAAACCCACCTAGAAAACAACGTAGCCTAACTTTAACATTAATACCTGCTGCTGGAAGGAGTGGGTTTTGCAGGAATTACCTTAATTTCAATGGAGATAAATTGACCTCATGCCAAGTCAAGAAATATTTTTAATTAGATGATCAGTGGGAGTGAAATCCCCAGTTTAGTCTCTACGATGCTTATGACTGGCACAGATTAGGAAGCCACTGGTTACTCAGGAAGACGGGATTACCCGGAGCTGCGTAGCAGTAGCATCAATCAAGGGTTGAGAGTTCAACCTTCAGTTAACTCCAACCACTTTCCTTAAGTCTTTTCTTCCTTATGGAACTACCAGCTGTCAGTCAACACGACAGACAATGTAAAAAGGCTCTAATATTTGGTACAATTATGCATGCAGCAAGCTACCAGCGAGCAGTAGTACTGTGTATACTGTCTACGTACTTGGCTTGATTTCTAAATTACCAGTGGGATTTACTGAGCAGATCAATTCTGAAGTGACTGTAGGCTGCAGTGTGCATGTAGGGATGGTTAATTACACTGTATCGTGCTTGCACAGTTTGTAAATTAAACGAGATTGTAACGGGGGGTAGTAGTGACTGTATGATTTTGGCTCTCCACGGTGCCTTTCATCTGTCTATGTTTTGTGCTTTCAAAAGTTGCAATAAATAAACCTCATGCTACATCTAGAAAGTCACTTGTTTTGTATTCCTCAGTGAACAAGGAACTGAACTGGGAAGGCTTTCACTAGCGTTGTTGTGGATGTGTAGCTCCTATCAGGAGGTGAAGTCATGGTGCTCCATGTTAAGTTTTCGGAGGTGCCACTGCTTGGCTCCGAGCACAGAGCCCATCCCCATAGAATCATAGAGATCCATCTGTGCTGTAAAATTGTCATAATGGTGCCTGGCCCCGCTCTGTACTATGTGGATAACCCACACCAGTGCCCAGGATGGGGAGGTTGGACCATTCCCCAGAGGCATCTTGGAAGCATGCATGGGACTGATGGAGTGGAGTTGAGACCATCTCTGTGAGCAGACCCAGGGCAAAGAGCAGCCCCGGGTCCCACGGAACTTTTCAGGTCTCCTTTTGAGCTCTGTGGCTTCTCTCTAACCAGGGGAGATAAAGAGGCACCTGGTGAGTGCTTTGTCCCCTTGAGATAAGTGCTTAATCACCCTGAGAGCTGCCACTGTCTCCAGTGGACATAGAGTCAAAGGTGACCAGCTCAGATTTAAACTTCTACAGGCAGTAATTCCTCTCCTAACCCTTTGTATTTCAAACCCTCACCCCTTTTCAAGAAATAATACATGAAGTGAGAATGTGGGTGATTCAGTTGTACTTCAAAGGTGTTTTTGCATTTATGTAAAGCGTAACCTGGGTAAAAGGCAGTCTGTTTCCCTCTCTCAAAGCTTTGGAGACCCATTATTCAAAGCTTTGGAGACCCATTATGTGTAATGTTAGGTTTTAGCAGAGAAACGTCCCAAGGTTCCTTTCCAGGTGTGAGAGCTCCACTTGCATTGGGCAGAGATAGGGAGGCAGCTCTAACATTACAGTCCATATACTTTAACAGATAACATTACACGTGCAAGATGAGATGTCAGCACATGGCTCAGACCTGGCTATGAACAAAGGGTGGCAGGAGTAGCAGTGAGAAAAGCAAACTCACCCTGGGAACATGTGGGGAGGTCAAGGGTTGCTTTCTCCCATTGGTTTTGTGGCTTTCTGTGCACGGCGCCCTCGGCAGCAGTTTGGTGAGAGGAAATCACCCATGAGCTCTGACTGTCGAGTGATTTACATCAAGCTTAGATGGCCCAAGTCCAAAACTGTGTGAGTGAGTGTGTGCGAGGGGGAAATCCAGGGGCTGAGGTTAAATATACGGATTCTAGTGAGGTCTGCTCTCAAGATCTTTATGCATATTAAAGGAGAGGATGATCCAAGGACAGAGCGGTGGATTTAGGGACAGAGACCCACAGCTGTGCCACGTGCTCAGATTCACCCCAACACCTCCCTGGATAGTCCTGAGCCACCATGCATCTAAATAGTACCTCCAAGAGGTCATTGTAAACATAACCCAACCTGCAGGGCTCAAAATCCAGAAGCAGAAACCGTATTTCTTGAGATGTTGTCCTGTCACGAGCAGCCTGTGTGCTGGGCTGCTGTTTCAACCTGCAGTGTTTGGTCTGTGGAGTCTGTAGAGTGATGTTGTATGTAATCAATGATTGTTTTGCTCTTTTGGGGAGATAG
Seq C2 exon
GTTCATTTGCCTTCGCTCCTTTCTAATGAAGGTCGAAAAGAAATAACTAGAGCTGAGAAGGAAGAGGATAAAAGAGGAAAACCAGAAGAAGAGGCTGTTGTAACCAAAAGAGGGGAGCCAGTCAGGATCAAGATCTTTGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027365:ENSGALT00000045163:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=NA C2=0.571
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=2.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]