GgaINT0137472 @ galGal3
Intron Retention
Gene
ENSGALG00000000635 | HIVEP3
Description
NA
Coordinates
chr23:846780-851837:+
Coord C1 exon
chr23:846780-847898
Coord A exon
chr23:847899-851691
Coord C2 exon
chr23:851692-851837
Length
3793 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TTGCTCTTTTGGGGAGATAGGTT
3' ss Score
-0.15
Exon sequences
Seq C1 exon
GTGGTGTCCCTCGTGGTCCCCGTCCGCATTCAGACCAACATGCCGTCCTACGGGAGCGCCATGTACACCACGCTTTCCCAGATCCTGGTCACTCAATCCCAGTGCAGTTCCTCTTCTATCGTTCTCCCCAAATTCGATGATTGCCAACCCAAGGGCACCCTGGTCTGCAGTGCTGATGTGCATGGCCTTGGGTTTGATCTAGCACAGATGATCACAGAGGAGCAAAGGATTTTCCAGAGCCCATATCTGAGGGTGCCCTTACCCCTACCGGAGCGAAAGGGCTGCATCCCGCTCACCTCCCCAGCAGACAGCGTCCTCGGGCTGGAGGGAGGCCCATCCACCGTTGGTGGAAGCAAGAGGATGCTCTCTCCAGCGGGCAGTTTGGAGCTGACGATGGAAACGCAGCAGCAGAAAAGAGTGAAAGAGGAGGAGGTGTCAGAAGCAGAGGAGAAGTTGGAAGTGGTGAAGCCACCCAGTGCAATAGAGGAAGGGAAAAAGCAGGATAAAGCTCACTTTCTTACCGAAAGCCAAGGCAGGGTTGAGGTTGAAACACCACCTAGTTTGTCCTTAGAGCAGTCGGAGCTAAAGGAAACCCCGAGTACTTTGCAACAAGCTGTGTCCCGGTCCGGTTCTCCAAGCTTTGAGGCGCTGGAGGAGTATCAGCAGCCAGCTGGCAAGCAGCCCCTTGGCAAGGCACCTTTACAAAGCGTGAAGAAAGAAGACTCCAAAGAGCCAGTGGAGCAGCCTCCACCAAGCCCTCCAAGCCCTGCACCTCTGTCCGAGGTCCCTTCAAGTGCAATGAAGTCTCGAGAAGGTACGGATATGAAGAAGGTACTTCAGTTCCCCAGTCTCCACACAACCACTAATGTCAGTTGGTGCTATTTAAACTACATAAAGCCAAATCACATCCAGCAAGTCGACCGGCGGTCTTCAGTGTATGCCAGCTGGTGTATTAGCTTGTATAACCCCAACCTTCCGGGTATATCCACTAAAGTCGCCCTGTCCCTCCTGAGGTCCAAGCAGAAGGTGAGCAGGGAAACCTACACCATGGCTACTGCTCCACGGCCAGAGGCAGGCAGGCTTGTCCCGTCCAGCTCCAGGAAGCCCAAAATGACAGAG
Seq A exon
GTAATGCAATCCTATATATTTCTCCTCATCTATTTGGATACATGGGAAGAGGGGGACGAGGGATGGGGAATTGCTGCTGTTAGTTTAATAGGAATTTGTTCATCCTTTTCTCAGTCTGGTAAGTTCTCAGTGAGACTTATAGAGTGAAGAAGCTAACACCCACTAGAATCCCCCCCAAAATGATAATAAATAAAAGGCAACCCTACTCCAAAGCAATGTGCCCTATTTCTGTCCTCCAGTTTCTACTTGCCTTGTAATCAAAAGAGCATGTAGGAATCACCACCGCACCATGAACCGCCACTGCTTGAGCACAAAGGATTAGACTTGATTTGCATTTCTGTCTCGATATTTCAAATAGCTTTACAACATTTTTTTTTTAAATAAATGCTGTTATAATTCCCTACATTTTGCATGTTATAAATGAAAAAGGATTACCTTGGGGAAATGGGATTCTGTCTGGTTGTGCATCTACTGATCTCACGTTAATGAACATGGAGAGGCATGCTTAAAAGTATTTAAAAATATTAAAGGGAGATTTGCAAGTGTATTTAGGCTCCCAAAGAAGTGTATAGGCATGCAGTGACATTTATAAAAGTGCCTCAGTAGGTTAGACATGGAGTCTTGTGAAAACACCCATGTCTTTTAGCCCATGTAGTTAATGTCCTTAGCTGTCTGCCTGCTTTTCTGGATATCTAAGGATATTTTATAGGTTGTCTTTGGAATTAAGAGGAGCAAGGTCAATGGCTTCGTGCAGGCAGAGCTCGCCAAAGCCATTGGCCACATGGGTGCAGGAGTCCTTAAGATGCTTCTGCTGCCTGGAGTTTTGTATCTTGCATTGAGGCCAGATTTTTTTCTCTCTCAGTTAATGCTGAACCATACAGATCCCTTTAATCCAGGTCATGTTCATGTAGATTAGCAAACAGAATTGCTCGAAAGACTTTGCAATTTGATATTCATCTCAAGTCAATTTATATTGATGGATTATTCATTTTATTTCTGAATCATGAAATGAACTCTGAATATTAAATTTATCGTAATCGCTGCTGCAGCTGCTGCTTATAAATATGTCTTAAAATGCACAGTAAAGTCGCTGTGATTCAATAAATCTTTATTTCCATTCAGCATTTCCATCATTCTCCTGCAGAAATCCAAAAGGCAGATTTTCTTGGAGCCTGGGGGCAGATAATTAGCTGTGCGGTGCAATAACCGCACTAATGCTTGATATTTATGCACTCTTTTTGCAGTGGATTTTATCTGGAGGGTGTTGTACCATCCTTGGTTCCATTCTCTAATAGAAGTGCCTGTGCTCCTTTGAACTTTGCTCTTTGGCGTGGTGCTAAAATGAACACAAAGGGTTGTGTTTCAGAAATACGAGAGACCCTCATATCCCAAAGTTAAAGTTCAGACCTACACAGGAGCGGCTCAGCCCTTACCCACCAGAACACCTATTTCACTGCCTGCATTTACTCAAAGGCTGACAAACCTTTTAGACAAAACCCTACAAAAGTTGCAGTTTTCACAGTGCAGTTTGCAAAAGCAAGGGCTTGTCCTGCAAAACCCACCTAGAAAACAACGTAGCCTAACTTTAACATTAATACCTGCTGCTGGAAGGAGTGGGTTTTGCAGGAATTACCTTAATTTCAATGGAGATAAATTGACCTCATGCCAAGTCAAGAAATATTTTTAATTAGATGATCAGTGGGAGTGAAATCCCCAGTTTAGTCTCTACGATGCTTATGACTGGCACAGATTAGGAAGCCACTGGTTACTCAGGAAGACGGGATTACCCGGAGCTGCGTAGCAGTAGCATCAATCAAGGGTTGAGAGTTCAACCTTCAGTTAACTCCAACCACTTTCCTTAAGTCTTTTCTTCCTTATGGAACTACCAGCTGTCAGTCAACACGACAGACAATGTAAAAAGGCTCTAATATTTGGTACAATTATGCATGCAGCAAGCTACCAGCGAGCAGTAGTACTGTGTATACTGTCTACGTACTTGGCTTGATTTCTAAATTACCAGTGGGATTTACTGAGCAGATCAATTCTGAAGTGACTGTAGGCTGCAGTGTGCATGTAGGGATGGTTAATTACACTGTATCGTGCTTGCACAGTTTGTAAATTAAACGAGATTGTAACGGGGGGTAGTAGTGACTGTATGATTTTGGCTCTCCACGGTGCCTTTCATCTGTCTATGTTTTGTGCTTTCAAAAGTTGCAATAAATAAACCTCATGCTACATCTAGAAAGTCACTTGTTTTGTATTCCTCAGTGAACAAGGAACTGAACTGGGAAGGCTTTCACTAGCGTTGTTGTGGATGTGTAGCTCCTATCAGGAGGTGAAGTCATGGTGCTCCATGTTAAGTTTTCGGAGGTGCCACTGCTTGGCTCCGAGCACAGAGCCCATCCCCATAGAATCATAGAGATCCATCTGTGCTGTAAAATTGTCATAATGGTGCCTGGCCCCGCTCTGTACTATGTGGATAACCCACACCAGTGCCCAGGATGGGGAGGTTGGACCATTCCCCAGAGGCATCTTGGAAGCATGCATGGGACTGATGGAGTGGAGTTGAGACCATCTCTGTGAGCAGACCCAGGGCAAAGAGCAGCCCCGGGTCCCACGGAACTTTTCAGGTCTCCTTTTGAGCTCTGTGGCTTCTCTCTAACCAGGGGAGATAAAGAGGCACCTGGTGAGTGCTTTGTCCCCTTGAGATAAGTGCTTAATCACCCTGAGAGCTGCCACTGTCTCCAGTGGACATAGAGTCAAAGGTGACCAGCTCAGATTTAAACTTCTACAGGCAGTAATTCCTCTCCTAACCCTTTGTATTTCAAACCCTCACCCCTTTTCAAGAAATAATACATGAAGTGAGAATGTGGGTGATTCAGTTGTACTTCAAAGGTGTTTTTGCATTTATGTAAAGCGTAACCTGGGTAAAAGGCAGTCTGTTTCCCTCTCTCAAAGCTTTGGAGACCCATTATTCAAAGCTTTGGAGACCCATTATGTGTAATGTTAGGTTTTAGCAGAGAAACGTCCCAAGGTTCCTTTCCAGGTGTGAGAGCTCCACTTGCATTGGGCAGAGATAGGGAGGCAGCTCTAACATTACAGTCCATATACTTTAACAGATAACATTACACGTGCAAGATGAGATGTCAGCACATGGCTCAGACCTGGCTATGAACAAAGGGTGGCAGGAGTAGCAGTGAGAAAAGCAAACTCACCCTGGGAACATGTGGGGAGGTCAAGGGTTGCTTTCTCCCATTGGTTTTGTGGCTTTCTGTGCACGGCGCCCTCGGCAGCAGTTTGGTGAGAGGAAATCACCCATGAGCTCTGACTGTCGAGTGATTTACATCAAGCTTAGATGGCCCAAGTCCAAAACTGTGTGAGTGAGTGTGTGCGAGGGGGAAATCCAGGGGCTGAGGTTAAATATACGGATTCTAGTGAGGTCTGCTCTCAAGATCTTTATGCATATTAAAGGAGAGGATGATCCAAGGACAGAGCGGTGGATTTAGGGACAGAGACCCACAGCTGTGCCACGTGCTCAGATTCACCCCAACACCTCCCTGGATAGTCCTGAGCCACCATGCATCTAAATAGTACCTCCAAGAGGTCATTGTAAACATAACCCAACCTGCAGGGCTCAAAATCCAGAAGCAGAAACCGTATTTCTTGAGATGTTGTCCTGTCACGAGCAGCCTGTGTGCTGGGCTGCTGTTTCAACCTGCAGTGTTTGGTCTGTGGAGTCTGTAGAGTGATGTTGTATGTAATCAATGATTGTTTTGCTCTTTTGGGGAGATAG
Seq C2 exon
GTTCATTTGCCTTCGCTCCTTTCTAATGAAGGTCGAAAAGAAATAACTAGAGCTGAGAAGGAAGAGGATAAAAGAGGAAAACCAGAAGAAGAGGCTGTTGTAACCAAAAGAGGGGAGCCAGTCAGGATCAAGATCTTTGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000635:ENSGALT00000000902:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.555 A=NA C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]