HsaINT0076334 @ hg19
Intron Retention
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:13561]
Coordinates
chr1:42041215-42050989:-
Coord C1 exon
chr1:42045408-42050989
Coord A exon
chr1:42041361-42045407
Coord C2 exon
chr1:42041215-42041360
Length
4047 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCATTCCTGCGGTGGGCCAGGTT
3' ss Score
4.17
Exon sequences
Seq C1 exon
AAGAAGAGCGTGATTTCTCCTCCAAGGCCGTTGATCTCCAACCCAGAACTAAAGGGGAGAAGAGCCACCCCCAGCATCCAGCGTGGCATCTCTTGTGCCAGGACCAGGGATGACTGGGCCATGGACACAGATGTCTCCAACCTTCAACCGTTTGCATAGCACACGGGGGACTCGTGGGGGCCACCTGCCACTGCCAGCTGAAACAATACAATGGCAATACTGACATCCTTCATGACGTTTTCCCGACAGACATTCAGGCAGAAAGTGCTGGTGCGTTTTCTGTCTGCAAAGTAGAGGGCCATGCCTCACCAATAGAATAGCGTGGGCCCTGATGACCTGCTCCGAGTCCACTCACAGCCAGTGACACTTGCAAAAAACTCCCAAAGCCGTCTTGGGTTTGGCTCCCACAGCTCTTGACCAATGTGGCCAAAGCTGGACACCTCCTTGGGACACTGGGATTATTCATAAATGCAGCCCGCCCTGACTCTCCCTGAATAGCATCTGAAGTCTTTGTGAAGGTCATGGATCCTGAACAAAGTGTCAAGGGCACCAAGAAGGCTGAGGGAAGTCCCCGGAAGCGGCTGACCAAAGGAGAGGCCATTCAGACCAGTGTTTCTTCCAGCGTCCCATACCCAGGCAGCGGCACAGCTGCCACCCAAGAGAGCCCCGCCCAAGAGCTCTTAGCCCCGCAGCCCTTCCCGGGCCCCTCATCAGTTCTTAGGGAAGGCTCTCAGGAGAAAACGGGCCAGCAGCAGAAGCCCCCCAAAAGGCCCCCCATCGAAGCATCCGTCCACATCTCACAGCTTCCGCAGCACCCTCTGACACCAGCATTCATGTCGCCTGGCAAACCTGAGCATCTCCTGGAGGGGTCCACATGGCAACTGGTTGACCCCATGAGACCTGGACCCTCTGGCTCCTTCGTGGCCCCTGGGCTCCATCCTCAGAGCCAGCTCCTTCCTTCCCACGCTTCCATCATTCCCCCCGAGGACCTTCCTGGAGTCCCCAAAGTCTTCGTGCCTCGTCCTTCCCAGGTCTCCTTGAAGCCCACAGAAGAGGCACACAAGAAGGAGAGGAAGCCCCAGAAGCCAGGCAAGTACATCTGCCAGTACTGCAGCCGGCCCTGTGCCAAGCCCAGCGTGCTCCAGAAGCACATTCGCTCACACACAGGTGAGAGGCCCTACCCCTGCGGCCCCTGTGGCTTCTCCTTCAAGACCAAGAGTAATCTCTACAAGCACAGGAAGTCCCATGCCCACCGCATCAAAGCAGGCCTGGCCTCAGGCATGGGTGGCGAGATGTACCCACATGGGCTGGAGATGGAGCGGATCCCTGGGGAAGAGTTTGAGGAGCCCACTGAGGGAGAAAGCACAGATTCTGAAGAGGAGACTAGTGCCACCTCTGGTCACCCTGCAGAGCTCTCCCCAAGACCCAAGCAGCCCCTTCTCTCCAGCGGGCTATACAGCTCTGGGAGCCACAGTTCCAGCCACGAACGCTGTTCCCTGTCCCAGTCCAGCACAGCCCAGTCACTCGAAGACCCCCCTCCATTTGTGGAACCCTCATCTGAGCACCCCCTGAGCCATAAACCTGAAGACACCCACACGATTAAGCAGAAGCTGGCCCTCCGCTTAAGCGAGAGGAAGAAGGTGATCGATGAGCAGGCGTTTCTGAGCCCAGGCAGCAAAGGGAGTACTGAGTCTGGGTATTTCTCTCGCTCCGAGAGTGCAGAGCAGCAGGTCAGCCCCCCAAACACCAACGCCAAGTCCTACGCTGAGATCATCTTTGGCAAGTGTGGGCGAATAGGACAGCGGACCGCCATGCTGACAGCCACCTCCACCCAGCCCCTCCTGCCCCTGTCCACCGAAGACAAGCCCAGCCTGGTGCCTTTGTCTGTACCCCGGACGCAGGTGATCGAGCACATCACGAAGCTCATCACCATCAACGAGGCCGTGGTGGACACCAGCGAGATCGACAGCGTGAAGCCAAGGCGGAGCTCACTGTCCAGGCGCAGCAGCATGGAGTCCCCAAAATCCAGCCTCTACCGGGAGCCCCTGTCATCCCACAGTGAGAAAACCAAGCCTGAACAATCACTGCTGAGCCTCCAGCACCCGCCCAGTACCGCCCCCCCTGTGCCTCTCCTGAGAAGCCACTCAATGCCTTCTGCCGCCTGCACTATCAGCACCCCCCACCACCCCTTCCGAGGTAGCTACTCCTTCGATGACCATATCACCGACTCCGAAGCCCTGAGCCACAGCAGTCACGTGTTTACCTCCCACCCCCGGATGCTGAAGCGCCAGCCGGCAATCGAATTACCTTTGGGAGGGGAATACAGTTCTGAGGAGCCTGGCCCAAGCAGCAAAGACACAGCCTCCAAGCCCTCGGACGAAGTGGAACCCAAGGAAAGCGAGCTTACCAAAAAGACCAAGAAGGGTTTGAAAACAAAAGGGGTGATCTACGAATGTAACATATGTGGTGCTCGGTACAAGAAAAGGGATAACTACGAAGCCCACAAAAAATACTACTGCTCAGAGCTTCAGATCGCAAAGCCCATCTCTGCAGGCACCCACACATCTCCAGAAGCTGAAAAGAGTCAGATTGAGCATGAGCCGTGGTCCCAAATGATGCATTACAAACTGGGAACCACCCTGGAACTCACTCCACTGAGGAAGAGGAGGAAAGAGAAGAGCCTTGGGGACGAGGAAGAGCCACCTGCCTTTGAGTCCACAAAAAGTCAGTTTGGCAGCCCCGGGCCATCTGATGCTGCTCGGAACCTTCCCCTGGAGTCCACCAAGTCACCAGCAGAACCAAGTAAATCAGTGCCCTCCTTGGAGGGACCCACGGGCTTCCAGCCAAGGACTCCCAAGCCAGGGTCCGGTTCAGAATCAGGGAAGGAGAGGAGAACAACGTCCAAAGAAATTTCTGTCATCCAGCACACCAGCTCCTTTGAGAAATCTGATTCTCTCGAGCAGCCGAGTGGCTTGGAAGGGGAAGACAAACCTCTGGCCCAGTTCCCATCACCCCCACCTGCCCCACACGGACGCTCTGCTCACTCCCTGCAGCCTAAGTTGGTCCGCCAGCCCAACATTCAGGTTCCTGAGATCCTAGTAACTGAGGAGCCTGACCGGCCGGACACAGAGCCAGAGCCGCCCCCTAAGGAACCTGAGAAGACTGAGGAGTTCCAATGGCCCCAGCGCAGCCAGACACTTGCCCAGCTCCCAGCTGAGAAGCTGCCACCCAAAAAGAAGAGGTTGCGCCTGGCAGAGATGGCCCAATCATCAGGGGAGTCCAGCTTCGAGTCCTCTGTGCCTCTGTCTCGCAGCCCGAGCCAGGAAAGCAATGTCTCTTTGAGTGGGTCCAGCCGCTCAGCCTCGTTTGAGAGGGATGACCATGGGAAAGCCGAGGCCCCCAGTCCCTCATCTGACATGCGCCCCAAACCCCTGGGCACCCACATGTTGACTGTCCCCAGCCACCACCCACATGCCCGAGAGATGCGGAGGTCAGCCTCAGAGCAGAGCCCCAACGTTTCCCATTCTGCCCACATGACCGAGACACGCAGCAAATCCTTTGACTATGGCAGCTTGTCCTTGACAGGCCCTTCTGCTCCAGCCCCAGTGGCTCCACCAGCGCGGGTGGCCCCGCCAGAGAGAAGAAAATGCTTCTTGGTGAGACAGGCCTCTCTGAGCAGGCCTCCAGAATCTGAGTTGGAGGTTGCCCCCAAGGGAAGACAGGAGAGCGAAGAACCACAGCCCTCATCCAGTAAACCCTCTGCCAAAAGCTCATTGTCCCAGATTTCCTCTGCGGCCACCTCACATGGTGGACCCCCGGGAGGCAAGGGCCCAGGGCAGGACAGGCCCCCATTGGGGCCCACTGTGCCCTACACAGAAGCACTGCAAGTGTTCCACCACCCCGTTGCCCAGACACCCCTGCATGAGAAGCCATACCTGCCCCCACCAGTCTCCCTTTTCTCCTTCCAGCATCTCGTGCAGCATGAGCCAGGACAGTCTCCAGAATTCTTCTCCACCCAGGCCATGTCCAGCCTCCTGTCCTCACCATACTCCATGCCCCCACTTCCTCCCTCCTTATTTCAAGCCCCACCGCTTCCTCTCCAGCCTACTGTTCTGCACCCAGGCCAACTCCATCTCCCCCAGCTCATGCCTCACCCAGCCAACATCCCCTTCAGGCAGCCCCCTTCCTTCCTCCCCATGCCATACCCGACCTCCTCAGCACTGTCTTCTGGGTTTTTCCTGCCTCTGCAATCCCAGTTTGCACTTCAGCTCCCTGGTGATGTGGAAAGCCATCTGCCCCAGATCAAAACCAGCCTGGCCCCACTGGCAACAGGAAGTGCTGGCCTCTCCCCCAGCACAGAGTACAGCAGTGACATCCGGCTACCCCCTGTGGCTCCCCCAGCCAGCTCCTCAGCACCTACATCAGCTCCTCCACTGGCCCTGCCTGCCTGTCCAGACACCATGGTGTCCCTGGTTGTGCCTGTCCGTGTTCAGACCAATATGCCGTCCTATGGGAGCGCAATGTACACCACCCTTTCCCAGATCTTGGTCACCCAGTCCCAAGGCAGCTCAGCAACTGTGGCACTTCCCAAGTTTGAGGAACCCCCATCAAAGGGGACGACTGTATGTGGTGCAGATGTGCATGAGGTTGGGCCCGGCCCTTCTGGGTTAAGTGAAGAGCAAAGCAGAGCTTTCCCAACTCCATACCTGAGAGTGCCTGTGACATTACCTGAAAGAAAAGGCACTTCCCTGTCATCAGAGAGTATCTTGAGCCTGGAGGGGAGTTCATCAACAGCAGGGGGAAGCAAACGTGTCCTTTCACCAGCTGGCAGCCTTGAACTTACCATGGAAACCCAGCAGCAAAAAAGAGTGAAGGAGGAGGAGGCTTCCAAGGCAGATGAAAAACTTGAGCTGGTAAAACCATGCAGTGTGGTCCTTACCAGCACCGAGGATGGGAAGAGGCCAGAGAAATCCCACTTAGGCAACCAGGGCCAAGGCAGGAGGGAGCTAGAAATGCTGTCCAGCCTGTCCTCAGATCCATCTGACACAAAGGAAATTCCTCCCCTCCCTCACCCTGCATTGTCCCATGGGACAGCCCCAGGCTCAGAAGCTTTGAAGGAATATCCCCAGCCATCTGGCAAACCTCACCGAAGAGGGTTGACCCCACTGAGCGTGAAGAAAGAAGATTCCAAGGAACAACCTGATCTCCCCTCCTTGGCACCTCCGAGCTCTCTGCCTCTGTCAGAAACGTCCTCCAGACCAGCCAAGTCACAAGAAGGTACGGACTCAAAGAAGGTACTGCAGTTCCCCAGCCTCCACACAACCACTAATGTCAGTTGGTGCTATTTAAACTACATTAAGCCAAATCACATCCAGCATGCAGATAGGAGGTCCTCTGTTTACGCTGGTTGGTGCATAAGTTTGTACAACCCCAACCTTCCGGGGGTTTCCACTAAAGCTGCTTTGTCCCTCCTGAGGTCTAAGCAGAAAGTGAGCAAAGAGACATACACCATGGCCACAGCTCCGCATCCTGAGGCAGGAAGGCTTGTGCCATCCAGCTCCCGCAAGCCCCGCATGACAGAG
Seq A exon
GTAAGTTCAGCCTTGTTTTTCTTCTCATCACTGATTTGCAAAAGCACTTGGCGAGCTTTTAAAGCCACAGTATCCTCAGGTTCCAGTTGCAGAACTAGAGCCAGACTAGTAGTCAGATTTCCTCTCTGAAAGCTGAGACTGGTCACCTTACAAGGAAACATGTTTATTGAGTTTCTTTGTCACTGTATCCCTCATATCATTGGAATAGATACACTTCAATAAAGTTAGCCATAAAGTGATCCTGCTCTGCCATGAATTTCTGTTGTGAAATCAAAGATACAGTCTCAGTAAGAAAAAAAAGAAATTTTCCAAAAGACTGAGTTGGAAAACTTGGCTAACAGGAATGCCTGTAGCAATTTTAGAACTTTTTACCTCTCCTTCATTATATGGATATCCCTTGTCTTGTTAGTCTTTTCCTGCTTTTCTTAATTCTTACATCTGCTGTTTCCATTCTCTAGTACCACTTTAAATCTTCCCATTTCCAAGATTCTAGAATTTGGCACAAACAACTCCTGAAATATTCCTTCTTCCTTTTCTGGGAGTAAGACAGCAAATGGAGCTGAGCTGCAGTATCCCTCCTTACCAGTGGATGGCAATGCCACTCACAGTTTGACCTATTTGTGCTACGTGGTCAAGAAACGCTAATGTTTACGCTTTCATTGCCTTTGATCTGAGGCTACATCAGGAGCTATAAAATGAACTCGTCCCCTGAAAGCTCAGCAAGTTTGAAATTCAATAATTTCAAATGTCAGACAAAAGCCACCACCATACCCTGACAAGGCCAGCCTAGGGATTTGGATTGTGCTGACTTGGCATTTGTGGAATAACAGCTGGTCTTGTTTACTGAGCAGCCTCATGGTGCCAGACACTGTGCTGGGCCCTTGAATCTGGTCACTGCTCACCTCCACCTCTGAAGTAACATAACCATCTCCCTTCTATAGCTTAGGGAACTGAGGGTCAGAGTCTGAGAAAGGTCAAGATAATCTGGCAAATGTTGAACAAACCCAGAATTTGAACCCAGACCTATCTGACTCCAAAGAGTCTATTTTTCTTCTTTTAATTATTTGAGGAGAGAAAATCTTAAAAGTTGACTGCAAATTAAAAAATGTTTATTAGTGTGTCTTCAGACCAGAAGCTCTGACCAAATTAGGTCTAAATTCCCTAAACCAAATTCATATTGTAGATAAGTGAGCACAACTGTGTTCTATAATTTCCTGTGCTCTCATATCTTCCCCTTTTGTCATTCAGTGAACTTTGTGCATTGAATTTGTCCTTAGCTTGACTGGATGTTCTTCACAGAACTGTTTTCCAAATTTATTCCCTAGATGTCTTTGTCAGTCTACAGACATCCCTGACCAAGATTTCCACTTTTGTGTTAATGTCCTGCTAATTTCCTCTTCAGCGTCTCTTACTAGCTGTGGCCACTCCCAAGATGCTGTTATAATTATTCATACTGCTAACTTTTTGGATACCTATTATGTACCAAGTACTATGCTAAATGTTACTTTTCTCCTCACAACCAACTTGAAAGTTAGGGTGCAATATCACCATTTCATAGATGAGGAGACCAAAACACAAGAGAGGTTAAGTAACTTTCACAAGGCCACACAGTAAATGGCAGAGCCTAGATCAAAACTAGATTTTACTCCAATGCCCTTTTGAATTATCTAAGCTGCCTCTAGTTTCTAATGACTGAAAATGTTACAGGCCATTTAAGAGAAAGGAAGTGTTAATTTGGATTCGGCAATTATTTATTTATAGTGCTCCTAAAACCTGCGAACTTTTTCTTGGAATATTCTGTTTGGTTCACTGGCATGTTTCCTTCCAGAATTGCACCAATCTGGTACATTAGTATAACCACATGGTCTATGGCTTAAGGCCTTTTATACAACTACACCTCTCTCTGGTCTCTGCTTGCATACTTCCAGCAAGAGGAACTCACCATCTCATGATGCAGTCCAATTCATCTTTGGACAGTGCTCTAAGAAGGTTCTTTACTGTACTGAGCTGACATTTGTCAGCTTGCGGCTTCCATTCTCTGTTAGTAGTTCTGAAAAAGTCCTTAGGTCTATCTTAGCATTTTGAAGCTCTTCCAAACCATCTTCATGCAGGTCTAGGACACCCCATGATGTTTTTGTTTGGTCATAGATCTTTTCTTCCACGTATAAACCCTGGAGAAACCCCAGCTTGTTCAGAGTCCACTTTGTAGCCACATTCTTTCCTTTTTCCTCCTTGGGAATCATTTTGACAACAACACAGCACTGTCACAAAGTGATTAAGAACAAGGACTCAGGTACCAAGTTGCCCAGGTTTGAATCCCACTACCTTACCTACTGGCTATGTGACCTTGGGCCAATAACTTCACCTCTCTGAGCCTTAGTTTCATCCTCTGTAAAATAGGGATAATAATAACACTTAGCGCATAGGACTGTGGAGATAATTAAATGAGTTAAGACATGCGGAGTGTGCTTAGAACAGTGTATGCCACACTGGCACTCAGTAAGTATTTTTAACTATACTTATTCATATTGTTGTCATCAAAAGCTAAAATGGATCCCTGGTCCCTGCTCAGTTCCAACACTGTGTTTCCTGGGAAAGTGGTACACTGCCACCCAAACCAGCCTCCTCCAGTGTGGCCCAGATATCACGGCAGGCTGTGAGGGAGAAGTAGTCTGTTTGCCTGTGGGAGGCACCTTGGTCATTACATGGACAGTCTAGATCTCAGGCCGGGGTGCAGTGGAAATGGTAGGCTCTGGAAACCCAAGGGTATTGCAGAAAACTAGCTGCCTTCTGCCAAAGCAGCAGTCCAGATTCTTGCTCGGTTTCCACTCCCCTCCTCCAAATCTGAAGAGATTATTTGGTGGTCACTGAGTCACAGAAGTTGCCCTGGAATTGATCTTCAAGATGGTCTAAATCCCCTCAGACTCTGAGGCCCAGAGAGGTGAAGTCATCCACCAAACGGCAGCCCAGTGTGCCATGGCCTATCTGGTGCTGGAACTCAGACTCCCTGATTCCCAGCCAGTCACCTTTCTACCTAGCCCCATGCTGTCCTTGTGGGGGCAGGTGTGGTGGCTGGCAAAGGGGACTGCCGTTCTTAGATTGCCCCAGCATCAGGAAATGTGGTTGCTTCATTCACTGGATGGAAACAGCATGGTTTTTCATGACCTTAATGACAGTGGCATGAAGTAGGAGGAAATTCTCACTCCCAGCCCCTAAGCACAGCATTTCTGCTCCCTAGGCAAAAGTGCACCCACCCCTGACAACACTGCAGTGTTTACAGGACGTGTTCTTGGGATAGTGGAAGATGTCCAGGAAGCACAAAGCCAATGCCAGCTCTCCCCTTAAGCTAGCTCTCATCACTGAGGTGTGGCTCTGTAAAGAGCGTGGGTCCTGCAGGACTAACAGCCCAGAGCCTGCACAGCCTCTCTGTGCCTGTCTCTATGGTGGAATTGGGGACGTCCTGCTGGTCAGGGTCCTCAGCCCAGCTCCTGGCCTTTGGTACTAGCTCAGGAGGGCCAAGATCCTGGAAGCAAGAGACCTGTGCTCTGCTCCCAGCTCTGCCCTTAACTCGCTGGGTGACCTTAGCTTTCTGATCTATAAACAAGAACTGGACCAGTTCATCTCCAAAGGCAGAGTGGAGCCTTGTTCATGTGTTCAACATTATTTAAGCCTCTTCTCTGAGACAGGCCCTGTATGGGGTTCTGGGGTGCCCAAGGAGACCAAGATGAGGACCTGTCCCCAGGAGTTCCCAGACTAGTGTAAAAGACAGAGAACAAACACAGGTCTTATGGGAGGTTAACATGAAAGAGACAGGGTTCCAGCTGTAACACCAACTAATGGCATGGCCTTGGATAAGGGAATTCTCTCTGGGGATCAGTTTCCTTAATTCTGTAAAGTGGAGCTAATAGCACCTCTTCATGGGGGAGTGTGAAGATTGCATATGTGTACTTGTGCAGTACTGTGTAAGGCATGATTATTAGCATTGCATTCGTGACTGAGGATGCACTTTTAACCAGCAATGATTTTGTCATTCCTGCGGTGGGCCAG
Seq C2 exon
GTTCACCTCCCTTCACTGGTTTCCCCGGAAGGCCAGAAAGATCTAGCTAGAGTGGAGAAGGAAGAAGAGAGGAGAGGGGAGCCGGAGGAGGATGCTCCTGCCTCCCAGAGAGGGGAGCCGGCGAGGATCAAAATCTTCGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124-HIVEP3:NM_024503:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=NA C2=0.898
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.5),PF139121=zf-C2H2_6=WD(100=1.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)