RnoINT0070924 @ rn6
Intron Retention
Gene
ENSRNOG00000009341 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:RGD Symbol;Acc:1311252]
Coordinates
chr5:139037816-139047483:+
Coord C1 exon
chr5:139037816-139043309
Coord A exon
chr5:139043310-139047349
Coord C2 exon
chr5:139047350-139047483
Length
4040 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TGTCCTCCTGATGAGTTCAGGTG
3' ss Score
3.3
Exon sequences
Seq C1 exon
AAGACCGTGATTTCTCCTCCGAGGTGTTAATCTCCAGTGCAGAATTCAAAGCAGAAGAGGGCCACTCCAGCATCCATCGTGGCATCTCTCCAGCCCGGACTAGGCATGACAGACCCATGGAAACAGGTGTCTCTGCCCTCCAGCTGTTCATATAGCACACAGGGGACTCGTGGGGGCCACTCGTCACTCAAATCCACTCAATGGCAATACTGACATCTTCCATGCTGTTTTCAAGACAGACGTTCAGGCAGAAAAATGCCAGTGTGCTTTCTGTCTGCAGAGTAGAGGGCTATGCCACACCAAAATGAACAGTGTGGGCCCCGGGACCTGCTCTGAGTCCACTTGCAGCCACTGACACTTGAGGGGATAAAAAGCCCAGCCCCAAAGCCACCGTGGGGTTGGCTTCCACAGCTCTTGACCAATGTGGCCAAAGCTAGACACTTCAGGACACTTGGATTATTCATAAATGCGACCTACCCCAAACTCCCTGAGTAGCATCTGAAGTCTTGTAAAGGTCATGGATCCTGACCAAAGCATCAAGGGCACCAAGAAGGCTGATGGAAGTCCCCGGAAGCGGCTGACCAAAGGAGAGGCCATTCAGACTAGTGTTTCTTCCAGCACTCCATACCCAGGCAGCAGCACTACTGCTTCCTCAGAGGGTGCCAGCCAGGAGCTCCTAGCCCCGCAGCCTTTCTCAGGCCCCTCAGTGGCTCTTAGGGAAGGCGCTCAGGAGAAAACGGGTCAGCAGCAGAAGCCTCCCCGGAGGCCATCCATCGAGGCCTCAGCCCACATCCCGAAGCTTCCGCAGCACCCTCTGACACCAGCATTCATGTCCCCTAGCAAACCAGAGCATCTCCTCGAGGGGTCCACGTGGCAGCTGGTCGACCCCACAAGACCTGGACCCTCAGGCTCCTTTGTGGCCCCGGGGCTGCATCCACAGAGCCAGCTCCTCCCATCCCATGCTTCTATCCTTCCTCCTGAGGACCTGCCTGGCATCCCTAAGGTCTTTGTGCCTCGTCCCTCACAGGTCTCCCTGAAGCCCACAGAAGAGGCACACAAAAAAGAGAGGAAACCGCAGAAGCCGGGCAAGTATATATGTCAGTACTGCAGCCGGCCCTGCGCCAAGCCCAGTGTGCTCCAGAAACACATTCGCTCACACACAGGTGAGAGGCCCTACCCCTGTGGCCCCTGTGGCTTCTCCTTCAAGACCAAAAGTAACCTCTACAAGCACAGGAAGTCCCATGCCCACCGAATCAAAGCTGGCCTGGCCTCTGGCTCCAGCAGTGAGATGTACCCCCCTGGGCTGGAGATGGAGAGGATCCCTGGGGAAGAGTTTGAGGAACCCACTGAGGGAGAAAGCACGGACTCTGAGGAGGAAACTGGTGCCACGTCAGGTCCCTCCACAGATGTTCTCCCCAAATCTAAGCACCCCCTGCTCTCAAGTAGTTTGTACAGCTCTGGGAGCCATGGTTCCAGCCAGGAACGCTGCTCCCAGTCAAGCACTGCACCATCGCTGGAAGACCCCACCCCATTTGCAGAAGCCTCATCGGAACATCCCCTGAGCCATAAACTGGAAGACACACACACCATCAAGCAGAAGCTGGCCCTCCGCCTGAGTGAGAGGAAGAAGCTGATCGAGGAGCAGACATTTCTGAGCCCAGGGAGCAAAGGCAGCACGGAGTCTGGTTATTTCTCACGCTCTGAGAGCGCTGAACAGCAGGTCAGCCCCCCCAACACCAATGCCAAGTCCTACGCAGAGATCATCTTCGGCAAGTGTGGACGGATTGGGCAGCGGACCTCCATGCTGGCATCCACCTCCACCCAGCCCCTACTGCCTCTGTCTGCTGAAGACAAGCCCAGCCTGGTGCCTTTGTCTGTGCCCAGGACACAGGTGATTGAACACATCACCAAGCTCATCACCATCAATGAGGCTGTGGTGGATACCAGTGAGATCGACAGCGTGAAGCCCAGGAGGAGTTCCCTAACCAGGCGCAGCAGCGTGGAGTCCCCAAAATCCAGCCTGTACCGGGAGTCACTATCGTCCCACGGGGAGAAGACAAAACAGGAACAGTCACTGCTGAGCCTCCAGCACCCACCCAGCTCCACGCACCCCGTGCCTCTGCTGAGAAGCCACTCAATGCCTTCTGCTGCCTGCACCATCAGCACCCACCACCACACCTTCCGCGGTAGCTACTCCTTTGATGACCACATTGCTGACCCCGAGGTCCCCAGCCGCAGCACTCCCGTGTTTACCTCCCACCCACGGATGCTAAAGCGCCAGCCAGCCATTGAATTACCTTTGGGAGCTGAGTACAGTTCCGAGGAACCTGGACCAAGCAGCAAAGACCCCATCACCAAGCCGTCCGATGAACCAGAACCCAAGGAAAGCGACCTTACCAAAAAGACCAAGAAGGGGTTGAAAACGAAAGGCGTGAACTATGAATGTACCATCTGCGGTGCTCGGTACAAAAAGAGAGATAATTATGAAGCTCATAAGAAGTACTACTGCTCTGAGCTCCAGATCACTAAAGCCCACCCTGCAGGTGCTCATGAAGTGGAAAAGACTCAGGCTGAGCCTGAGCCTTGGTCCCAGATGATGCATTATAAACTGGGGGCCACATTGGAACTCACCCCACTGAGAAAAAGACGAAAGGAAAAGAGCCTTGGGGATGAGGAAGAGCCGCCTGGCTTCAGCAGCCCTGGCCCATCAGACGCAGCCCATAACCTTCCCCTGGAGTCTACCAAGTCACCAGCAGAAGCAAGCAAATCAGTACCCACTTTAGAGGGACCCACGAGCTTCCAGCCCAGGACTCCCAAGCCAGGATCTGGGTCAGAACCAGGGAAGGAGAGGAGAACGATGTCCAAAGAAATTTCCGTCATCCAGCACACCAGCTCCTTTGAGAAGTCTGACCCACCAGAGCAGCCAGGCAGCCTGGAAGAAGACAAGCCCCTGGCCCCGTTCTCATCCCCGCCACCTGCCCCGCACGGACGCTCCGCTCACTCTCTGCAGCCGAGGCTGGTCCGCCAGCCCAACATTCAGGTTCCAGAGATCCTTGTGACCGAAGAACCAGACAGGCCCGACACAGAGCCTGAGCCACCCCCAAAGGAGCCTGAGAAGACAGAAGAGTTCCAGTGGCCCCAGCGCAGCCAGACACTGGCACAGCTCCCAGCAGAGAAGCTGCCACCCAAGAAAAAGAGACTACGCCTGGCTGAGATGGCGCAGTCCTCAGGGGAGTCCAGCTTTGAGTCCTCCGTGCCTCTGTCTCGAAGCCCAAGCCAGGAGAGCAGCATTTCTCTAAGTGGCTCCAGCCGCTCAGCTTCATTTGACAGGGAAGACCATGGAAAAGCTGAGACCCCCGGACCCCTATCAGACACACGCTCCAAAACCTTGGGCACCCACATGCTGACTGTCCCCAGCCACCACCCACATGCCCGAGAGATGAGAAGGTCAGCCTCAGAGCAGAGCCCCAATGTGCCCCATTCCTCACACATGACTGAGACCCGAAGCAAATCCTTTGACTACGGCAGCTTGTCCCCAACAGGACCATCTGTAGCAGTGCCTGCAGCTCCTCCACCCCCAGCCGCCCCACCAGAAAGAAGAAAATGCTTTCTGGTAAGACAGGCCTCCCTGAGCAGACCTCCAGAAGCAGAGCTGGAAGCCACCCCCAAAGGAAAACAAGAGAGCAGTGAGGAACCCTCAGCCAGCAAGCCTTCCACAAAAAGTTCCATGGCCCAGATCTCTGTGGCCACTATACAAGGTGGGCTCTCGGGAAGCAAGAGCCAGATGCAGGACAGACCTCCACTGGGGTCCAGCCCACCCTACACAGAAGCTCTGCAGGTGTTCCAACCTCTTGGCACCCAACTGCCCCCTCCAGTCTCCCTCTTCTCCTTGCAACAGCTCTTGCCCCAGGAGCAAGAACAGTCCTCTGAGTTCTTCCCCACGCAGGCAATGGCTGGCCTCCTCTCCTCCCCATATTCTGTGCCCCCACTCCCACCTTCATTGTTCCAAGCCCCACCACTTCCTCTACAGCCTACTGTGCTACACCCCAGCCAGCTCCATCTCCCCCAGCTCTTGCCCCATGCTGCAGATATCCCCTTCCAACAGCCCCCTTCCTTTCTCCCCATGCCATGCCCTGCCCCCTCAACCCTCTCTGGATATTTTCTCCCTCTGCAATCCCAGTTTGCACTGCAACTCCCTGGTGAAATAGAAAGCCACTTGCCCTCAATCAAAACCAGCCTGCCCCCTCTGGCAACAGGACCTCCTGGCCCCTCCAGTAGCACAGAATATAGTAGTGACATCCAACTGCCGCCTGTGACTCCCCAAGCCACCTCCCCAGCTCCTACATCAGCCTCACCACTGGCCCTGCCTGCCTGTCCAGATGCTATGGTGTCACTGGTTGTTCCTGTCCGCATCCAAACCCACATGCCATCCTATGGGAGTGCCATGTATACCACTTTGTCTCAGATCTTGGTCACACAGTCTCCAGGTAGCTCAACAAGCATGGCTCTTACCAAGTATGAGGAACCCTCCTCCAAAAGCATGACTGTTTGTGGGGCTGATGTATATGAGGCTGAGCCTGGGCCATCTAGCATAAGCAAAGAACAAAGCAGAGGTTTTCAGACACCATATCTGAGAGTACCTGAAAGGAAAGGCACTGCACTGTCTTCTGAGGGCATCCTCAGCCTGGAGGGGTGCTCATCCACAGCCAGTGGAAGCAAGCGTGTCCTTTCCCCAGCTGGCAGTCTTGAACTTACCATGGAAACCCAGCAGCAAAAACGGGTAAAGGAAGAGGAAGCTTCCAAGGCAGATGAAAAACTGGAGCTTGTGAGTACCTGTAATGTTGTGCTAACCAGTACAGAGGACAGGAAGAAGACAGAGAAACCCCATGTGGGAAGCCAAGGCCGAAGCAGGAGGGAGACAGAAACACTGTCCTGCTTGTCTTCAGATGTATCTGACCCAAAAGAACTTTCTCCCCTCTCTCAGTCCACATTGTCCCATGGGACAGCCCCAGGCTCAGAAGCTTTGAAAGAATATGCCCAACCATCTAGCAAAGCTCACCGAAGATGTCTGCCTCCACTGAGTGTAAAGAAAGAAGATCCAAAGGAACAGACTGACCTCCCTCCCCTAGCACCTCCTAGTTCTCTGCCTCTGTCAGATACTTCCCCTAGACCAGCCAAATTGCAAGAAGGTACAGACTCAAAGAAGGTACTGCAGTTCCCCAGCCTCCACACGACCACTAATGTCAGTTGGTGCTATTTAAACTACATTAAGCCAAATCACATCCAGCATGCAGATAGGAGGTCCTCTGTTTACGCTGGTTGGTGCATAAGTTTGTACAACCCCAACCTTCCAGGGGTTTCCACTAAAGCTGCTTTGTCCCTCCTGAGATCTAAGCAGAAGGTGAGCAAAGAGACATATACCATGGCCACAGCTCCACATCCTGAGGCAGGAAGGCTGGTTCCATCCAACTCCCGAAAGCCCCGCATGACAGAG
Seq A exon
GTAAGTTCTGCCTTGTTCTAGCCACCAAATGCAAAAGTGTTGAGCTTTTAAAGCCACATTGTTTTCATGCTAAGTTTGTAGAATTAAAGCCAGCTTGGGATGGGAGGCAGATTTTTCTCTCTGGGAGTTCTGACCTCATAAGAAAATATGTTCAATGGGATTCTCTGTCCTTGTGTCCCTAACATATATAACATAGTTGCAATAATATTATCAGCAAAATAGTTTCCAGAAGTTTCTACTGTAAAATCAAAAGTTCAGTTTGAGGAAGATAAAAGAGTGATTCTCTAAAGAACAGAGTTGGGGAAATTGGTGGGGAGGCTTTGAGCAATTTTAGAACTTTATTTCCAGCCCTTTCCCACATGGTTCTCCATTGTTTTATTAGTTTCTTTCTGCTTTTTTTTTCTGTATCTCCTGGGGTTTTTTAATCCTCTTCTGCCCCTTAAAGTCATCTCATTTCCACATTTGACACAATCCAATCCTGAAACAGTCCTTTTCTGTAAGATGGTGCATAGAACTGGGCTGTGGGAAACCTCTCCACCTGTAGGAAACAATGTCACTCACAATTTGAGCCATCTGTGCTACAGAATAGCAGTAGGCTCTCAATGCAGCTCATATTTATTCTTTCATCACCTCTGACCAGGGCTACTTCATAACTTAACAGATTTGCAAGTCAAAAATTCCAATTTGCATAAAAAGACACTTTTACACAGGCAGGTATAGCCTAAAGCTTCAGGTCATGACCTGTGCTGGCCTAGTATGACAAAAATACCCTGACAAAAGTAGCTTAAGGGAAAGGATTCATTTTTATTCATAGTTTCAGAAGGATACAATACACAGTGGCCAGGAAGCCATGGTAGAGGCAGGGAAGGCATTTGGAAGTTAGCTGGTTGCATTGCCTCCACATTCAGAAAGCAGAGAATGAATAAGGAGCAGAGCCAGCTATAAACCCTTAAGGGCCTCACAATAGACCCTTCTTCCTCCAGTGAGGGTGCCCCTCCTAATGGTTGAACAACCTTCCCAAACAGCACCAGTTTATATAGAGACTTTTTACATTCAAACTATGCCTGGAATTTATGGAGTGACCAGCGGTCTTGTTTGGTGCCAAGCCCTGTGTTGGACCCTGGAACCCAGTTACTACTCACCTCCACCTGTAAGACAGCATCACCTCCTCCAATATGCAGATGAGGGAACCTGGGCTCAGAGGTGGAAAGAGGTCAAGGACATGGAGCAAACATTTGGGAATTCCAGAATTTGAACTAAGCAGACCTAACTGGATATAAAGAGTTTTTCTCCCCCACTGCCTCTCTCTCGTTACCAACGAATGAATTTTTTTAAAAAGATAATTGCAAATTTAATTATGTCCAAATGTAACTGTTCCAACCAGATGCTTTGACCAAATCCCACACAGATACTGGAACCCAGACTCCATTTGTAGACCTGAGAGCAGACCTGTGTCTGCAGCTTCACAGACGCTCATGCCATCTGCTTTCATCATGAGGGTGAAAGTCATAAAAGAAGCACCCTGAGCTCAGCTGGATATTCTCCACAAACTGCTTTCCAAATGTATTCTCTGATGTTTTTGTCAGTCCACAGACATCTCTGAACAGGATTTCCACTTCTGATGTAACTACCATAAACTGTGGCTATTGCCAGGATGCTGATATAATTATATTCACAACTTTTGGGGCACCTGCTGTGTGCCAGATACTGTGCTAAACTTTACTTTTGTTTTCATAAGACCTTGGGGAACTAGGGTACAATAGGTAAATAGACCAAAGTTCAAAGAGGCCAAGTAACTTACACAGGGCCACACAGTAAATGGCAAAGATCAGATTCAGAACTAGAGCTCACTCCAAAACCCTTTGAAACAGGCCTGAACTGTTCCTGCTCCCCGATGAGGGGTGTCAGAGGTATATAAGGCAAAAGGAGTGTTGATTTCTTGTCTATAGATTTAACAGTCATTTTTTTCATTCTGCTGCTTTCCTAAAATGAGTTAAAACCTACAGACATTTCCTTGGAATTTAAATTTTCCTGCTCAAGGTGCACAAATATGGCACATTATATAACTGCATGGTCTGTAAGCTGTGGCTTTTCTACAACACCCATTCCCTTGCTTGCATGTCTCCGCTAATGGGAGGCTCACCCCCTGCCAACCCCAGCACCACCCAGCCTGTACTTGACTACAGTTTAAGATCTTCTGCACACTCCGATGACAGTTGTCACCTAGTTCCCCTAGCCATTATGAAAATGCCACTTATCTAAGTACTAGGAAGCCTGGCTTCACTGTATCTTGCAGGTATACTCTACGTCACATTGAATATGGTCATATGCATTTAGATCCTGGAGGGACCCACACTTACACCATCATCCATCTTGCCATCATTTCTTTTCTTATGCTTTTTCTTCCCCTTTTCCCCCTCCATGGGCCTCACTCTTTGGGCTCCCACTGCAGGACTGAACTGCCTAGGCTTGAGGCCCATTCCACTTATCCAGCTGTGTGACCATGGGCCATTCCTCCCTGCGCCTTGGTTTCTTCATCTGAAAATGAGGGGTGTTGCTTAGCTCAAGGCTGTGAGTGTGGGTAACAATGTTAACCAGTGAAGCCATGACTATGTCCTAGCTAATATGACCCATATTACTATTCAGTGCTAACATGGGTCCTAGACCCCCACCCCACTCGGTTTAGGCACTGTTTCCTGGAACTGCACTGCCACCCAATCCTACCTCCTCTGGCCTCCCCAGAGTGGCATCAATGGCATCAGGATACTGTGCACCTGCCTGTGACAGACCTTCGGCCACTCTGTGGATTGCAGGCCAGGGTGGGAATGTGAAGTATGCCCTAGAAATCTAACTGCTTGGCTTCCACCAGCACAGCTGTCTAGACCTGGGCTGGGTTTCCATTTTCCCCTTCCATTAGTAGAGATTCTATGGGGGTCACTGAGTCATGGAAGTTAGTTTCTGAATAGATCTTTAAGATGGTCTAAGCCAGGTCTGGAGAGATGGCTAGTTAAGAGTGCTTAACTCCTTAGTTAAGAGTACTTACTCTTCTTACAGAGGTCAAGAGTTTAGATTCCCAGCACCCACATGAAGTGACTCACAATTGCCTGTGACTCCAGCTCCAGGGAATCTGATGCCTTGTTCTTTTCTGTGCACATATATGCATACATAAATTAACGTACACACACACACACACACACACACACACACACACACACACACACAAATTAAAGCCTTTTTAAAACGGCCGAAAGCCTTTTTAGTTTCACACCCCACAGAGTGTAGTAGTCTATCTAAGGGTATCCCAGCCTCCAGTGGGTTCTATTTGGCATTGGAACTCGCTTCTCCTGGATCCCAAGGTGCCCCTTATCTCAGCACCCTATGTAAAGATAGCCACGCCCCTGGCTCAGACTTAGAGAATGTACTCTCAGGACCCTGAAAAAATGCTGGAAGTTCACAATCAGTGTCAGCCTTCCCCACAGAGCCAGGTCTCACTGCGGCTCATTGCTCTGCAAAGAGTGGATACCCCGGTCCCCACTCTGAGGCTGATCCTGCATCCTGAGAGCCTATAGTTTCTGGCCTTTGGTGTTGGCTCACAAGGGCTAGTGCGGGAAGCAGGAGACCTCTGCATTGCTGGGGCCACACCCTTAACCTAGTAGGCTGCTTTTGCTTTCTGATCCGACCAAGAGAACATCACAGTTAACTCGTGTGGCAGAACCAAGACTTCACCTATTTCTTCAGCATTATCTGTCTTCTTGATCTCTCTGTTTTAAGTACTGGAGTGACCAAGGTGAATGAGACATGTCCCCAAAGGCCCCAAGGCTAACATAGAGCACAGAGACCTACCTGTATACCTCAGGGGAAAATGATCTTGAGAGGGGGTCAAAACACAGCTTGGAGGAGACTGTCTCTTGTGACCAGTCCTTGATTCTGTGGAGGGCGATTGAGTGAAAACCAGAAGGCCATGTGGGCACATGTGTCTTTGCCCTTGACCCAGTCCACAAGGTTAACCAATCTTGGTTCTGTCCTCCTGATGAGTTCAG
Seq C2 exon
GTGCACCTCCCGTCGATGGTTTCCCTGGAGAGCCAGAAAGACCCAGCTAGAGTGGAGAAGGAAGAAAAGGCAGAGGAAGGTACTCCAACTTCCAAGAGAGGCGAGCCGACGAGGGTCAAGATCTTCGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009341:ENSRNOT00000066774:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=NA C2=0.933
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.6),PF139121=zf-C2H2_6=WD(100=1.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]