MmuINT0077949 @ mm10
Intron Retention
Gene
ENSMUSG00000028634 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:MGI Symbol;Acc:MGI:106589]
Coordinates
chr4:120093964-120103854:+
Coord C1 exon
chr4:120093964-120099450
Coord A exon
chr4:120099451-120103711
Coord C2 exon
chr4:120103712-120103854
Length
4261 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GTCTTTCCCACGGAGTTCAGGTG
3' ss Score
1.14
Exon sequences
Seq C1 exon
AAGACCGTGATTTCTCCTCCGAGGCTGCTATTCTCCAATACAGAATTCAAGGGCAGAAGAGGGCCGCCCCAGCATCCATTGTGGCATCTCTCCGGCCCGGACTAGGGATGACAGGCCCATGGACATGGATGTCTCCGACCTTCAGCTGTTCATATAGCACACAGGGGACTCGTGGGGGCCGCTTGTCACCCAAACCCACTCAATGGCAATACTGACATCTTCCAGGCTGTTTTCAAGACAGGCGTTCAGGCAGAAAAATGCCAGTATGCTTTCTGTCTGCAGAGTAGTGGGCTATGCCACACCAATATGAACAGCGTGGGCCCTGGGACCTGCTCTGAGTCCACTTGCAGCCACTGACACTTGAGGGGATTAAAAAAAAAAGCCCAGCCCCAAAACCATCGTGGGGTTGGCTTCCATGGCTCTTGACCAATGTGGCCAAAGCTAGACACCTCGGGACACTTGGATTATTCATAAATGCGACCTACCCCAAACTCCCTGAGTAGCATCTGAAGTCTTGTGAAGGTCATGGATCCTGACCAAAGCATCAAGGGCACCAAGAAGGCTGATGGAAGTCCCCGGAAGCGGCTGACCAAAGGAGAGGCCATTCAGACGAGTGTTTCTTCCAGTGCTCCATACCCAGGCAGCGGCACTACTGCTCCCTCAGAGAGTGCCACCCAGGAGCTCCTAGCCACGCAGCCTTTCTCAGGCCCCTCTCAGGAGAAAACGGGCCAGCAGCAGAAGCCTGCCCGGAGGCCTTCCATCGAGGCCTCGGTCCACATCTCTCAGCTTCCGCAGCACCCTCTGACACCAGCATTCATGTCCCCGGGCAAGCCAGAGCATCTCCTCGAGGGGTCCACGTGGCAGCTGGTTGACCCCATGAGACCTGGACCCTCGGGCTCCTTTGTGGCCCCCGGGCTGCATCCGCAGAGCCAGCTCCTCCCATCCCATGCTTCTATCCTTCCTCCTGAGGAGCTGCCTGGCATCCCTAAGGTCTTTGTGCCTCGTCCCTCACAGGTCTCCCTGAAACCTGCAGAAGAGGCACACAAGAAAGAGAGGAAACCGCAGAAGCCAGGCAAGTATATATGTCAATACTGCAGCCGACCCTGCGCCAAGCCCAGTGTGCTCCAGAAACACATTCGCTCACACACAGGTGAGAGGCCCTACCCCTGCGGCCCCTGCGGCTTCTCCTTCAAGACCAAGAGTAACCTCTACAAGCACAGGAAGTCCCATGCCCACCGTATCAAAGCTGGCCTGGCCTCGGGCTCCAGCAGTGAGATGTACCCCCCTGGGCTGGAGATGGAGAGGATCCCCGGGGAAGAGTTTGAGGAACCCACCGAGGGAGAAAGCACAGACTCTGAGGAGGAAACGGGTGCCGCATCAGGTCCCTCCACAGATGTTCTCCCCAAACCCAAGCACCCCCTGCTCTCAAGTAGTTTGTACAGCTCCGGGAGCCACGGTTCCAGCCAGGAACGCTGCTCCCTCTCCCAGTCAAGCACTGGCCCATCACTAGAGGACCCCGCCCCATTTGCAGAAGCCTCATCGGAACATCCCCTGAGCCATAAACCGGAAGACACGCACACCATCAAGCAGAAGCTGGCACTCCGCCTGAGTGAGAGGAAGAAGCTGATCGAAGAGCAGACATTCCTGAGCCCAGGGAGCAAAGGCAGCACAGAGTCCGGGTACTTCTCACGCTCTGAGAGCGCTGAGCAGCAGGTCAGCCCCCCCAACACCAACGCAAAGTCCTACGCAGAGATCATCTTCGGCAAGTGTGGACGGATTGGGCAGCGGACCTCCATGCTGGCATCCACCTCTACCCAGCCCCTACTGCCTCTATCCTCGGAAGACAAGCCCAGCTTGGTACCTTTGTCTGTGCCCAGGACACAAGTGATCGAACATATCACCAAGCTCATCACCATCAATGAAGCCGTGGTGGACACCAGTGAGATCGACAGTGTGAAGCCCAGGAGGAGCTCTCTAACCAGGCGCAGCAGCGTGGAGTCCCCGAAGTCCAGCCTCTACCGGGACTCACTATCGTCCCATGGGGAGAAGACTAAGCAGGAGCAATCACTGCTGAGCCTCCAGCACCCACCCAGCTCCACGCACCCTGTGCCTCTCCTGAGAAGTCACTCAATGCCTTCTGCCGCCTGCACCATCAGCACCCACCACCACACCTTCCGTGGTAGCTACTCCTTTGATGACCACGTCGCTGACCCCGAGGTCCCCAGCCGCAACACTCCCGTGTTTACCTCCCACCCACGGATGCTAAAGCGCCAGCCAGCCATTGAATTACCTTTGGGGGGTGAGTACAGTTCCGAGGAGCCTGGACCGAGCAGCAAGGACCCCACCTCCAAGCCCTCCGATGAACCAGAACCCAAGGAAAGCGACCTTACCAAAAAGACCAAGAAGGGGTTCAAAACAAAAGGCGCGAACTATGAATGTACCATCTGCGGTGCTCGGTACAAAAAGAGAGATAATTACGAAGCTCATAAGAAGTACTACTGCTCTGAGCTCCAGATCACAAAAGCCCACTCTGTAGGTGCTCATGAAGTGGAAAAGACTCAGGCTGAGCCTGAGCCTTGGTCCCAGATGATGCATTATAAACTGGGGGCCACCTTGGAACTCACTCCGCTGAGAAAAAGACGGAAAGAAAAGAGCCTTGGAGATGAGGAAGAGCCACCTGCCTTTGGCAGCCCAGGCCCTTCAGAAACAGCTCATAACCGTCCCCTGGGGTCCACCAAGTCACCAGCAGAAGCAAGCAAATCAGCGCCCTCTCTAGAGGGACCCACGAGCTTCCAGCCCAGGACTCCCAAGCCAGGAGCTGGGTCAGAACCAGGGAAGGAGAGGAGAACAATGTCCAAAGAAATTTCCGTCATCCAGCACACCAGCTCCTTTGAGAAGTCTGACCCACCGGAGCAGCCCAGTGGCCTGGAGGAAGACAAGCCCCCGGCCCAGTTCTCATCCCCACCACCTGCCCCGCACGGACGCTCCGCTCACTCCCTGCAGCCAAGGTTGGTCCGGCAGCCCAACATTCAGGTTCCAGAGATCCTCGTGACAGAAGAACCGGACAGGCCTGACACAGAGCCTGAGCCGCCCCCCAAGGAGCCTGAGAAGACAGAAGAATTCCAGTGGCCCCAGCGCAGCCAGACACTGGCACAACTCCCAGCGGAGAAGCTGCCACCCAAGAAAAAGAGACTCCGCCTGGCTGAGATGGCGCAGTCCTCGGGGGAGTCCAGCTTTGAGTCCTCCGTGCCTCTGTCTCGAAGCCCAAGCCAGGAGAGCAGCATTTCTCTGAGTGGCTCCAGCCGCTCGGCTTCATTCGACAGGGAAGACCATGGAAAAGCTGAGGCCCCTGGACCCTTCTCAGACACACGCTCCAAAACCTTGGGCTCCCACATGCTGACTGTCCCCAGCCACCACCCACATGCCCGAGAGATGAGACGGTCAGCCTCAGAGCAGAGCCCCAATGTGCCCCATTCCTCACACATGACTGAGACCCGAAGCAAATCCTTTGACTACGGCAGCTTGTCCCCTACAGGACCATCCTTAGCAGTGCCTGCTGCTCCGCCACCCCCAGCCGCCCCGCCAGAAAGAAGAAAATGCTTTCTGGTACGTCAGGCCTCCCTGAACAGACCTCCAGAAGCCGAGCTGGAGGCTGTGCCCAAGGGAAAACAAGAGAGCAGTGAGGAGCCCGCAGCCAGCAAGCCTTCCACAAAAAGCTCTGTGCCCCAGATCTCTGTGGGCACTACGCAAGGTGGGCCTTCAGGGGGCAAAAGCCAGATGCAGGACAGGCCCCCACTGGGATCCAGCCCACCCTACACAGAAGCTCTGCAAGTGTTCCAACCTCTCGGCACCCAGCTGCCCCCTCCAGCCTCTCTCTTCTCCTTGCAACAGCTCTTGCCTCAGGAGCAAGAACAATCCTCTGAGTTCTTCCCCACACAAGCAATGGCCGGCCTCCTCTCCTCCCCATACTCCATGCCCCCGCTCCCACCTTCCTTGTTCCAAGCCCCACCACTTCCTCTACAGCCTACTGTGCTACACCCCAGCCAGCTCCATCTCCCCCAGCTCCTGCCTCACGCTGCAGATATCCCCTTCCAGCAGCCCCCTTCCTTTCTCCCCATGCCATGCCCTGCCCCTTCAACCCTCTCCGGATATTTCCTCCCTCTGCAATCCCAGTTTGCACTGCAGCTCCCTGGTGAAATAGAAAGCCACTTGCCCCCAGTCAAAACCAGCCTGCCCCCTCTGGCCACAGGACCTCCTGGCCCCTCCAGCAGCACAGAATACAGCAGTGACATCCAGCTGCCTCCTGTGACTCCCCAAGCCACCTCCCCAGCTCCCACATCAGCCCCACCACTGGCCCTTCCTGCCTGTCCAGATGCCATGGTGTCACTGGTTGTTCCTGTCCGAATCCAGACCCATATGCCATCCTATGGAAGTGCCATGTACACCACTTTGTCTCAGATCTTGGTCACACAGTCTCCGGGTAGCCCAGCAAGCACGGCCCTTACCAAGTACGAGGAACCCTCCTCCAAAAGTATGACTGTTTGTGAGGCTGATGTATATGAGGCTGAGCCTGGGCCATCGAGCATAAGCAAGGAACAAAACAGAGGTTACCAGACACCATATCTGAGAGTACCTGAAAGGAAAGGCACTTCACTGTCTTCTGAGGGTATCCTGAGCCTGGAGGGGTGCTCATCCACAGCCAGTGGAAGCAAGCGCGTCCTTTCCCCAGCTGGCAGTCTTGAACTTACCATGGAAACCCAGCAGCAGAAAAGGGTAAAGGAGGAAGAAGCTTCCAAGGCAGATGAAAAACTGGAGCTTGTGAGTACCTGTAGTGTCGTGCTGACAAGTACAGAGGATAGGAAGAAGACAGAGAAACCCCATGTGGGTGGCCAGGGCCGGAGCAGGAGGGAGGCAGAAACACTGTCCAGCTTGTCTTCAGATGTATCCGACCCAAAAGAACTTTCTCCCCTCTCTCATTCCACATTGTCCCATGGGACAGCCCCAGGCTCAGAAGCTTTGAAGGAATATGCCCAACCATCTAGCAAAGCTCACCGAAGAGGTCTGCCTCCAATGAGTGTAAAGAAAGAAGATCCAAAGGAACAGACTGACCTCCCTCCCCTGGCACCCCCTAGTTCTCTGCCTCTGTCAGATACTTCCCCTAAACCAGCCAAATTGCAAGAAGGTACGGACTCAAAGAAGGTACTGCAGTTCCCCAGCCTCCACACAACCACTAATGTCAGTTGGTGCTATTTAAACTACATTAAGCCAAATCACATCCAGCATGCAGATAGGAGGTCCTCTGTTTACGCTGGTTGGTGCATAAGTTTGTACAACCCCAACCTTCCAGGGGTTTCCACTAAAGCTGCTTTGTCCCTCCTGCGATCTAAGCAGAAGGTGAGCAAAGAGACATATACCATGGCCACAGCTCCGCATCCTGAGGCAGGAAGGCTGGTTCCATCCAACTCCCGAAAGCCCCGCATGACAGAG
Seq A exon
GTAAGTTCTGCCTTGTTCTAGCCACCAAGTAATGCAAAAGCTTATGTTGAGCTTTTAAAGCCACATTGTCTTCATGCTAAGTTTGTAGAATTAAAGCCAGCTTGAGGTGAGAGGCAGGTTTTTCTCTCTGGGAGTCTTGACCTCATAAGAAAACATGTTCACTGAGCTTCTCTGCCCTTGTGTCCCTAACATAGTTGCAGTAACGCTATCAGCAAAATGCTGCTACTTTTCCAGAAGTTTCTACTATAAAATTGAAAAGTTCAGTTTCAGGAAGATATAGAGTGATTCTCTAAAGAACAAAGTTGGGGAAATTGGTGGGGATGCTTTGGACAATTTTAGAACTTTATTCCAGCATTTTCCCATGTGGTTCTCCATCATCTTATTAGTTTCAATCTGCTTTTTAAATTTTTTCTGTATCTGCTGGGGGGGGGTCTCTACTATCCTTTAAAATTGTCTCATTTCCACATTTGACACAATTCACTCCTAAAAGAATACTTTCCTGTAAGATGGTGCATAGAACTGGGCTGCAGTAAACCTCTCCACGTGTAGGAGACAATATCACAATTTGAGATGTCTGTGCTATAGATTAGCAGTAGGGTTTCAATGCAACTCATATTTATTCTTCCATTGCCTCTGACCTGGGCTACTTAAGGAGCTATGCAATAAAGTTTCCCATATCATTTTAACAGATTTGAAACTCAGAAATTCCAATTTGCATAAAAAAGACAACACTTTTACACAGGCAAGACCAGCCTAAAGCTTCAGGCCAGGACCTGTGCTGGCCTAATGTGACAAAATATCCCAACAAAAGTAACCTAAGGGAAAGAATTTATTTTGACTTATAACTTCAGAAGCATACAATACATAGTGGCCAGGAAGCCATGGAAGAGGCAGAAGAGGCATTTAGAAGTTGGCTGGTTGCTGGGCATGGTGGCGCACACCTTTAATCCCAGCACTCGAGAGGCAGAGGCAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCGAAAAAAAAAGAAAAAAAAAATAAAGAAGTTGGCTGGTTGTATTGTCTCCACATTCAGGAAGCAGAGAATGAATAAGGAGCAGAGCCCAGCTATAAATCCTTAAGGTCATCACTATAGACACTCTCTTGAACAATCTTCCCAAACAGCATCAGTTTATATGGGGACTTTTCACATTCAAACCATGCCTGGAATTTTTGGAGTGAGCAGTGGTCTTTTGGTTGCCAAGCCCTGTGCTGGGCCCTGGACCCTAAGCACTTCTCACCTCGCCTTGTAAGGCGACATCACCTCATCCATTGTACAGATGAGGGAACCTGGGCTCAGAGGCTGAAGGAGGTCAAAGACTTGGGGCAAACATTTGGCAATTCCAGAATTTGAATTAAGCAGACGTAGCTGGATGAAAAAGAGTATTTCTTTTCTTTTCTTTTTTTCTTTTCTTTCTTCTTTTCTTTTTTCTTTCCTTTCCTTTTGTTTGTCTCCATTCTCTCTCTCTCTCTCTTTCATTGTTAGTTGAGGAATGAAACTTTTGAGAGATAATTACAAATTTAATGATGTCCACATGTAACTGTTACAAACTGGTGCTTTGACCAAATCCCACACAGACACTGGAACCCAGACTACTTTTGTAGACCTGAGAGCAGACCTGTGTCTGCAGCTTCCCAGATGCTTATACAATCTGCTTTCATCATGAGGTGAAAGTCATATCAGAAGTGACTGGGCTCAGCTGGATATTCTTCACAAACTGCTTTCCAAATTTATTCTCTGATGTCTTTGTCAGTCCACATCAGACATCTCTGAGCAGGATTTCCACTTCTGGTGTTACTGCCATAAACTGTGGCTGCTGCCAAGATGCTGGCATAGTTACACTGGAAACACACCTGCTGTGTGCCAGATACTGTGCTAAACTTTACTCTTGTTTTCATAACACCCTGGGAAACTAGGGTACAGTAGGTAAATAGATCAAAGTTCAGAGAGGCTAAGTAACTTACACAAGGCCACACAGTAAATGGCAAAGATCAGATTCAGAACTAGAGCTCACTCCAAAATCCTTTGAAACAGGTCTGAACTGTCCTATTCCCTGATGAGTGGTATCAGAAGTATGTAAGACAAGAGAAGTGTTGGTTTCTCATCTCTAAATTTAACAGTCATTTTTTTCATCCTGCTGCTTTCATAAAATGAGCTGAAACCTACAGACATTTCCTTAGAGTTTAAATGTTCCTACCCAAAGTGTACAAATATCACACATTAATATAACTGCATGGTCTCTAAGCTGAGGCTTTTCTACAACCCCCATTCCCTTCCTTACATGTCTCCAGTAATGGGAGGCTCACCCCCCTGCCAGCCCCAGCACCACCCAAGCCATACTTGGCTACAGTTTAAGCTCTTCTGCACACTCTACTGACAGTTGTCACTTTGTAGCTGGTGTCTTCCCTTAGCCATTACATAAATGTCATTTATCTAAGCACTAGGAAACATGGCTTAGCTGTCATCTTTAGTATGGTCCACAACACATTATGTTTGGTCATCTGCATTTAAATCCTGAAGAGACCCATGCTTGCATAACCATCCATCTTGCACAATCCATCTTGCAGTCATTTCTTTTCTTATACTTTTTCTTCCATTTTCTCTCACTCTAATAGCCATAGCCCTGCAATGGGAGCAAGGACTGAACTGCCCAGGTTTGAGGCCCACTATTTCACATATTCAGCTGTGTGACCATGGGCCATTCACCTAACTTCCCTGTACCTTGGTTTCTTCATCTGAAAATGAGGAGTGATGCTAACTTAGCTCAAGGCTGTGAGGGTGGGCAACAGTGTTGACCAGTGAAGCTATATATATGCCCTAGCTAACATGACCCACATTACTATTCAATGCTACCACGGATCCTAGGCCCCCACCCCACTCAATTTAGGCACTGTTTCCTGGAATTGTGTTGCCACCCAATCCTACCTCCTCTGGCCTCCCCAGAATGGCATCATATAGCAATGGAGACTCTGTGTGCCTGCCTGTGTTGGACCCCTTGGCAACTCTGTGGATTGCAGGCCATGGTGGAAATGTGGAGTGTGCCCTAGAAATCTAACTGCTTGGCTTCCACCAGCACAGCTGTCTAGACCTGAACTTAGTTTCCATTTCCCCTCCCATTGGGAAGGGACCTCAGTGACCTCTATGGGGTCACTGAGTCACAGAAATCAGTTTCTGAATGGATCTTTAGGATGATCTAAGCCAGGTCTGAAGAGGTGGCTCTTTAGTCAAGAGTGGTTACTCTTCTTACAGAGTTTAGATCCCCAGCACCCACGTGAAGTGGCTCACAATCACCTGTGAGTCCAGCTCCAGGGGATCTGATGTCCTGTTCTTTTCTGTGCACATGTGTACATACACACACACACACACACACACACACACACACACACACACACACACCACAATTAAAAATAAAAAAAAAAATTTAATGGCCTAAGGCTTTCTTAGTTTCAAACCCCAGAAGGTGTAGTAGTCTATCTAAGGGTATCCCAGCCTCCAGTGATCTATTTGGCATTGGAACTCACTTTTCCTGGTTCCCAAGGTGCCCCTTATCTCAGCTCTATGGGTGCGAGCATCCTATGTAAAGATGTACATCACCCCCCACCCCCGCCTCAGATTTAGAGAATATATTCTCAGGACCCTGGAAAACACTGGAAATTCACAATCAGGGTTCACCCTTCCCACAGATCCAGTTCTCACTGCAGCCCACTGTTCTACAGAGAGTGGATACCCCAGTGGCCTTTGGTGTTGGCTCAGGAGGGCTAGTGCAGGAAGCAGGAGACCTGTGCATTGCTGGAGCCACGCCCTTTACCTAGTAGATTGCTTTGGCTTTCCAATCTGACCATGAGAACACCACGGTTATACATGTATACAGAGCCAAGGCTTCGCCTATTTCTTCAGCATTATTTGTCTTTTTTGATCCCTATTTTAAGTACTGGAGTGACCAAGGTGAATGAGACATATCCCCAAAGACCCCATAGCATAGAACACAAAGACCTACCTGTGCGTCTCAGGGGAAAATGATCTTGAGAGGGGTTCAAAACACAGCTTAGAGGAGACTTTGACTCTTGTGGCCAGTCCTTGAGTCTGTAGAGGGTGTTGAGTGAAAAACAGAGGCCGTGTGGGTGCACATGCCTTTGCCCCTGACCCAGTATGCAAGGCTAACCAATCTTGGTTCTGTCTTTCCCACGGAGTTCAG
Seq C2 exon
GTGCACCTCCCGTCGCTGGTTTCCCCAGAGAGCCAGAAAGACCCAGCTAGAGTGGAAAAGGAAGAAAAGCAAGGGAAGGCGGAGGAAGGTACTCCCACTTCCAAGAGAGGCGAGCCGGCGAGGGTCAAGATCTTCGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028634:ENSMUST00000106307:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.826 A=NA C2=0.938
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.6),PF139121=zf-C2H2_6=WD(100=1.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types