MmuINT0077941 @ mm9
Intron Retention
Gene
ENSMUSG00000015501 | Hivep2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:MGI Symbol;Acc:MGI:1338076]
Coordinates
chr10:13847099-13853700:+
Coord C1 exon
chr10:13847099-13852604
Coord A exon
chr10:13852605-13853545
Coord C2 exon
chr10:13853546-13853700
Length
941 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTCTCTTTTGATCCTGCAGATG
3' ss Score
11.99
Exon sequences
Seq C1 exon
GCCGTTGTACTTCAGTGAGACTGGCTGTTGAACTTTGCTGTAGTTGATGAGCAGAATTTCTGGGCTCTTCATCATCCCAGCCCCATCCTAGTTGAAAAAGATTCAAATGCCCTAACTTTGCACTTTGCTTTTGAAGAAGGACATTTCTAGGATGGAGAGAACTGTGTTATAGTTTGGTTCCAGGACACTGGCATCCAATGCCCACTGACTCCAGTGTGAGCGCGGAAGGTTCCAGAGAGAGGGATCAGTCCGCGAGTTCACAACCAGGAACCCAGAAACAACCTGGCTTTAAAAAGCACAGCATTGGAGACACTCCATGAGTCTGCTTGGCTTCCGGGCAAAGTAGCATTTAAGACCTTGTGTTAAAATGGACACCGGGGACACAGCTCTAGGACAAAAAGCTACCTCAAGGTCTGGAGAAACTGACAGCGTGTCTGGTAGATGGAGGCAGGAACAATCAGCTGTTCTTAAGATGAGCACTTTCAGCAGTCAGGAAGGGCCAAGACAACCACAGATAGATCCTGAGCAGATCGGAAATGCAGCTTCGGCGCAGCTGTTTGGTTCTGGGAAGCTGGCCTCGCCTGGCGAGGGCCTACATCAAGTCACAGAGAAGCAATACCCACCTCACCGTCCGAGTCCCTACCCATGCCAACACTCGCTCTCTTTCCCTCAGCATTCACTATCCCAGGGCATGACGCACAGCCACAAGCCACACCAGAGCCTAGAGGGCCCTCCCTGGCTTTTCCCTGGCCCTTTGCCATCTGTCGCCTCTGAGGACCTATTTCCTTTTCCAATGCACGGCCACAGCGGTGGTTATCCTAGAAAAAAGATCTCAAATCTCAACCCTGCTTACAGCCAATACTCCCAGAAAAGTATCGAACAGGCAGAAGATGCTCACAAGAAAGAGCACAAACCCAAAAAGCCAGGCAAGTATATCTGCCCGTACTGCAGCAGGGCATGTGCGAAACCCAGCGTCTTAAAGAAACACATCAGGTCCCATACTGGTGAGCGGCCGTATCCATGTATACCTTGTGGCTTCTCTTTCAAGACAAAGAGTAATTTGTACAAGCACAGGAAGTCTCATGCCCATGCAATTAAGGCAGGCTTGGTACCCTTCACTGAGTCGTCTGTATCCAAATTGGACCTCGAGGCTGGTTTTATCGATGTAGAAGCAGAGATCCACTCAGACGGTGAGCAGAGCACAGACACGGATGAGGAGAGCTCTTTATTTGCTGAGGCTTCTGACAAAGTGAGCCCTGGCCCTCCCGTCCCTTTGGACATTGCTAGCAGAGGTGGCTACCATGGGTCCTTGGAAGAATCTTTGGGAGGTCCCATGAAGGTGCCAATTTTGATTATTCCCAAAAGTGGGATCCCACTAGCCAGTGAGGGCTCTCAGTATCTGAGCTCTGAAATGCTCCCCAATCCGTCTCTGAATGCTAAGGCGGATGACTCTCACACGGTGAAACAGAAACTTGCGCTGAGACTGTCAGAGAAGAAAGGACAAGACTCTGAGCCATCCCTTAACCTCCTGAGCCCGCACAGCAAGGGGAGTACGGACTCTGGTTACTTTTCTCGCTCAGAAAGTGCGGAGCAGCAGATCAGCCCACCCAACACAAACGCCAAGTCTTATGAAGAAATCATTTTTGGAAAATACTGTCGACTTAGTCCAAGGAATACACTTAGTGTTACTCCCACCGGTCAGGAGCGCACCGCCATGGGGCGCAGGGGCATCATGGAACCATTACCTCATTTAAACACCCGGTTGGAGGTCAAGATGTTTGAAGATCCTATCTCTCAACTGAATCCCAGCAAAGGAGAAATGGACCCCGGTCAAATCAACATGTTGAAGACCACGAAATTCAACAGTGAGTGTCGGCAACCACAAGCCATCCCGTCCTCTGTTAGGAATGAAGGAAAACCTTACCCAGGCAACTTCCTAGGCAGCAATCCAATGCTCTTAGAAGCTCCTGTGGACTCTTCACCCCTTATTAGAAGCAACTCGATGCCAACGTCTTCAGCAACAAATTTAAGTGTCCCTCCTTCTTTGAGAGGAAGCCACTCGTTTGATGAAAGGATGACAGGGTCTGATGATGTGTTCTATCCCGGCACTGTGGGCATACCTCCCCAGCGCATGCTCAGACGGCAAGCAGCCTTCGAGCTGCCGTCGGTCCAGGAGGGCCACATGGAGTCTGAGCACCCTGCACGGGTATCCAAGGGCCTTGCCAGTCCATCCCTGAAGGAAAAGAAATTACTTCCCGGAGACAGGCCCGGCTATGACTACGATGTCTGCCGTAAACCATACAAGAAATGGGAAGACTCTGAAACACTGAAACAGAGCTACCTGGGTTCCTTCAAGCAAGGAGGGGAATATTTTATGGACCCCTCGGTGCCAGTGCAGGGAGTGCCAACCATGTTCGGGACTACCTGTGAGAACAGAAAACGCAGGAAAGAGAAGAGCGTGGGAGATGAAGAGGATGTTCCCATGATCTGTGGTGGCATGGGAAATGCTCCCGTGGGCATGATGTCCTCAGAGTACGACCCCAAGCTGCAGGACGGAGGAAGGAGTGGCTTTGCCATGACTGCACACGAGAGCCTTGCTCATGGTCACTCCGACCGTCTAGACCCAGCTCGACCCCAGCTGCCATCTAGAAGTCCATCCCTTGGGTCTGAGGATTTGCCCTTGGCTGCTGATCCAGACAAGATGACAGACCTGGGCAAGAAGCCTCCAGGAAATGTGATTTCAGTGATCCAGCACACAAACTCGCTGAGCCGGCCCAATTCCTTTGAAAGATCTGAGTCAACAGAAATGGTGGCCTGCCCACAGGACAAGACCCCTTCACCTGCTGAGACATGTGACAGTGAGGTTTTGGAAGCCCCTGTAAGCCCAGAGTGGGCTCCTCCAGGGGATGGTGGAGAAAGCGGAAGCAAGCCAACCCCTTCACAGCAGGTACCACAGCACTCCTACCATGCACAGCCAAGGCTTGTTCGCCAGCACAATATCCAGGTTCCTGAAATCAGAGTCACAGAGGAACCTGACAAGCCCGAGAAGGAGAAGGAAGCTCCTACCAAGGAGCCTGAGAAGCCAGTGGAGGAATTCCAGTGGCCTCAGAGAAGCGAAACTCTTTCCCAACTCCCTGCTGAGAAGTTGCCTCCCAAAAAGAAACGCTTGAGGCTTGCAGATTTGGAACACTCCTCAGGGGAATCCAGCTTTGAGTCCACAGGCACCGGCCTCTCTAGGAGTCCCAGCCAAGAAAGCAACTTATCCCACAGTTCCAGTTTCTCCATGTCCTTTGATAGAGAAGAAACGGTTAAGCTCACTGCACCTCCTAAGCAGGATGAGAGCGGGAAGCATTCTGAGTTTCTGACTGTCCCTGCGGGTTCATACTCATTGTCTGTTCCGGGTCATCACCACCAGAAAGAAATGCGGCGTTGCTCCTCCGAGCAGATGCCCTGTCCTCACCCGACGGAAGTCCCAGAAATACGGAGTAAATCGTTTGATTATGGGAACCTGTCCCACGCTCCAGTGGCTGGAACATCCCCATCAACACTATCACCGTCCCGGGAGAGGAAGAAATGCTTTTTGGTGCGTCAGGCTTCCTTCAGTGGCTCCCCAGAAATTGCCCAAGGTGAAGCCGGCGTGGACCCCAGCGTCAAGCAGGAGCACATGGAGCACTTGCACGCTGGCCTCAGGGCTGCGTGGTCCTCTGTGCTTCCACCTCTGCCAGGGGATGACCCAGGAAAGCAGGTCGGTACTTGTGGCCCACTGAGCTCAGGGCCACCACTCCACCTTACCCAGCAGCAGATCATGCACATGGACAGTCAGGAATCTCTGAGAAATCCGTTGATTCAACCAACATCCTACATGACGAGCAAGCACTTACCCGAACAGCCACATCTGTTTCCACATCAAGATGCGGTCCCATTTTCTCCTATCCAGAATGCCTTGTTTCAGTTTCAGTACCCGACTGTGTGTATGGTTCATCTGCCAGCTCAGCAGCCTCCCTGGTGGCAGACACATTTCCCCCATCCCTTCGCTCCACACCCTCAGAACAGCTACAGTAAGCCTCCCTTCCAAGCTGACCTTCATTCTAGCTACCCCTTAGAGCATGTAGCAGAACACACTGGAAAGAAATCTGCTGACTATCCCCATGCGAAAGAGCAGACTTACCCGTGTTATTCCGGAACATCAGGGCTACACTCCAAGAACCTCCCTCTGAAGTTTCCATCAGACCCGGGCAGTAAGTCCACTGAAACGCCCACGGAGCAGCTCCTTCGAGAAGATTTCGCCTCAGAAAATGCTGGGCCTTTGCAGTCCCTACCGGGAACAGTGGTTCCTGTTCGGATCCAGACCCACGTTCCATCCTACGGAAGTGTCATGTACACAAGCATTTCTCAGATACTTGGACAGAACAGCCCCGCCATCGTCATATGCAAGGTCGATGAGAATATGACCCAAAGAACACTGGTAACCAATGCAGCCATGCAAGGGATAGGATTAAACATAGCTCAAGTGCTTGGGCAGCACACGGGCTTGGAAAAATACCCTCTTTGGAAAGTACCTCAGACCTTACCCCTGGGCTTAGAGTCCTCTATCCCCTTGTGTTTACCGTCCACCTCAGACAACGCAGCCTCTCTCGGAGGAAGCAAGCGGATGCTCTCTCCAGCCAGCAGTTTGGAGCTCTTCATGGAAACCAAGCAACAGAAACGGGTGAAAGAGGAGAAGATGTACGGGCAGATTGTGGAAGAACTCAGTGCCGTGGAGCTAACCAACTCAGACATCAAGAAGGGCCTTTCCCGGCCCCAGAAGCCCCAGCTCGTGAGGCAGGGGTGTGCTTCGGAGCCAAAGGATGGCTGCTTCCAGTCAAGGTCTTCTTCCTTCTCCTCCCTGTCACCCTCCTCTTCTCAAGACCATCCGTCTGCCAGCGGGCCCTTCCCTCCCAACAGGGAGATTCTTCCAGGGTCCAGGGCTCCGCCGCGACGGAAGTTCAGCGGGCCCTCAGAAAGCAGAGAGTCCTCCGATGAGCTGGACATGGATGAGACGTCGTCAGACATGAGCATGAGCCCTCAGAGCTCTGCACTGCCCACCGGAGGCGGTCAGCAGGAAGAGGAAGGGAAAGCCCGCAAGCTGCCCGTCAGCATGCTGGTCCACATGGCCTCTGGTCCTGGAGGAAATGTGGCAAATTCCACTCTTCTTTTCACAGACGTGGCCGATTTCCAGCAGATACTTCAGTTCCCCAGTCTGCGGACAACTACTACTGTGAGTTGGTGCTTCTTAAATTATACAAAACCCAGTTTTGTGCAACAGGCCACCTTCAAATCCTCCGTTTATGCTTCATGGTGCATTAGTTCCTGTAACCCAAACCCATCAGGATTGAACACCAAGACCACGCTGGCCCTTCTGAGATCCAAACAAAAAATTACTGCAGAAATTTATACTCTGGCTGCTATGCACAGGCCCGGAGCTGGTAAGCTCACTTCATCCAGCGTCTGGAAGCAGTTTGCACAG
Seq A exon
GTAACAACAGACCCTGGCTTAGAAAGTACGGTGGGTTGTGGGTCAGATGCTAAGTAGACTGTGAAGGATAGAATATCTAAAAGGTAAAATATAGTAGGAACATTTTTGTAACCTGCTCTTATCCAGAGATGGGAGATGCCATAGCCTGCCTTTACTCTGAGGGCTCCCAGAAAAGCTCCAAATATTGGGAGTGCTTTGTCAGCCCAGATAAGGGGAATTCTCCTGCTGGGACTAATGATTATTGGTCATTTTCCCCTCTGCCTCTTGAGTGATAGTGCAAACATGAGGAAATCCAGGGCTTATGAAATGAGGAAATGAAACATGGAATGGATACTGAAAAAAAAGAATGAGGAGGAAGTATGGAGGGTGTTAGACCTCAGAGGGCAAGTGCCACCAATGACACCAAGGGTGTGCTTGACTACAATTCATATTCTGTGTATCTCTTTCAAAAATGACTTTCCCCAGTTATTGTTTTCTCCTGATTTGCCCCTATATAGTTAGTCCTTACATGTAAAAATTTAAAATATGATAACTTTTAGAGTAAACAAAATTAATAGTGAAGAAAATAGAGATTTGAAAAATGTATTTTGGATGTTATGTTAAGGTTAGTTTCCCTTCAATGATTTTTGAAACTACCTCCTTAATATGGAATGTTTGGCTTGTTCCTTCAAATGGCAGAGTATGTGTTAGTCTCTGTTAACATTTCACAGAGGAAATGAGAAGTACTCAGTGGCTGTGCACCTAAACATTGAAGTGACCATATGGAAACTGACATTTTTCCCTCTGATTTTATCTCTGGTGTCCTCTGTTTTCTGCAATCAATTTGTAGCCTTTTATTAAAGAATTTAAGCTAGCTTGCAGGAATGATAGAAGGGCAGGATGTATAGGCCAGACTATCCTGGAGAAAGCACGTGGAATGATTCTCTCTTTTGATCCTGCAG
Seq C2 exon
ATGAAGCCTGATGCGCCCTTCTTGTTTGGCAACAAACTAGAAAGGAAATTAGCAGGAAATGTCCTAAAGGAAAGAGGGAAAGGAGAGATTCACGGAGATAAAGATCTTGGATCCAAACAAACTGAGCCAATCCGAATTAAGATCTTTGAAGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015501-Hivep2:NM_010437:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.192
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTCACAGACGTGGCCGAT
R:
AAACAAGAAGGGCGCATCAGG
Band lengths:
342-1283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: