HsaINT0076325 @ hg19
Intron Retention
Gene
ENSG00000010818 | HIVEP2
Description
human immunodeficiency virus type I enhancer binding protein 2 [Source:HGNC Symbol;Acc:4921]
Coordinates
chr6:143089519-143096262:-
Coord C1 exon
chr6:143090689-143096262
Coord A exon
chr6:143089674-143090688
Coord C2 exon
chr6:143089519-143089673
Length
1015 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTCTCTTCTTGTCTTACAGATG
3' ss Score
12.87
Exon sequences
Seq C1 exon
ATCATTTTATCTTAGTGAAACTGGCAATTGAACTTTGCTCTAGTTGATGGGCAAAATTTCTCCTAGACTATTCATCATCCCAATTTCATCCTAGTTGAAAATTTTCAAATGCCATAAGAAATCTTTATAGATTTGCACTTAGCTTTTGGATGGACGTTTCTACAATGGAGAGAACTGTGTTATAGCCCTGGTCCAAGGACATTACTAGCTAATGCCCATCGACTGTGGTGTGCGTGTGGAAGGTTCCAAAGAGAAGGAGCAATCAGCAAGTTTGCAGACACCCTGGAACATGGAAGCAACCAAGCTTTAAGAAGCACAGCTTTGGAGACACTCCATGAGTCTGCACTGCTTTCAGGGGAACTAGCACTTAAGACCTTGTGTAACAAAATGGACACTGGGGACACAGCTCTAGGACAAAAAGCTACCTCAAGGTCTGGAGAAACTGATAAAGCATCAGGTAGATGGAGACAGGAACAATCAGCTGTTATTAAGATGAGCACTTTTGGCAGTCATGAAGGACAGCGGCAACCACAAATAGAGCCTGAGCAAATCGGAAACACAGCATCAGCACAACTGTTTGGTTCTGGGAAACTGGCCTCCCCTAGTGAAGTGGTGCAGCAAGTCGCAGAGAAGCAATATCCACCGCATCGTCCGAGTCCTTACTCATGCCAACACTCACTCTCTTTCCCTCAGCACTCATTGCCACAGGGGGTCATGCACAGCACCAAGCCACATCAGAGCCTCGAAGGTCCTCCGTGGCTTTTCCCTGGCCCTTTGCCATCCGTTGCCTCTGAGGACTTATTTCCTTTTCCTATACATGGCCACAGTGGTGGTTATCCTAGAAAAAAGATTTCAAGTCTGAACCCTGCTTATAGCCAATACTCCCAGAAAAGTATTGAACAGGCAGAAGAGGCTCACAAGAAAGAGCACAAACCCAAAAAGCCTGGCAAGTACATTTGCCCTTACTGCAGCAGAGCGTGTGCCAAACCTAGTGTACTGAAAAAACACATCAGGTCCCATACTGGGGAGCGGCCATATCCATGTATACCTTGTGGTTTCTCTTTCAAGACAAAGAGCAATTTGTACAAGCACAGGAAGTCACATGCCCATGCAATTAAGGCAGGATTAGTACCTTTCACAGAGTCAGCTGTATCTAAATTGGACCTAGAGGCTGGTTTTATTGATGTAGAAGCAGAAATACATTCAGATGGTGAACAGAGTACAGACACAGATGAGGAGAGTTCTTTATTTGCCGAGGCTTCTGACAAAATGAGTCCTGGTCCACCCATCCCACTGGACATTGCCAGCAGAGGCGGCTATCATGGGTCATTGGAAGAATCATTGGGAGGTCCAATGAAGGTGCCGATTTTGATTATCCCTAAAAGTGGGATTCCTCTCCCTAATGAAAGCTCTCAGTATATTGGCCCTGATATGCTACCAAATCCATCTTTAAATACTAAGGCTGATGATTCGCACACAGTCAAACAGAAACTTGCACTAAGACTGTCAGAGAAAAAAGGACAAGATTCTGAGCCATCGCTCAACCTTCTGAGCCCGCACAGTAAAGGAAGCACTGATTCTGGTTACTTTTCTCGCTCAGAAAGTGCTGAGCAGCAAATAAGCCCTCCCAACACAAATGCAAAGTCTTATGAAGAAATCATCTTTGGAAAATACTGTCGGCTTAGTCCGAGAAATGCACTCAGTGTTACAACCACAAGTCAGGAGCGTGCCGCAATGGGTAGGAAGGGCATAATGGAACCATTACCTCACGTTAACACCAGGTTAGATGTCAAGATGTTTGAAGATCCTGTTTCACAGCTGATCCCAAGCAAGGGAGATGTCGACCCCAGTCAAACGAGCATGCTGAAATCCACTAAGTTCAACAGTGAGTCCAGACAACCCCAGATTATTCCATCATCTATCAGGAACGAAGGAAAACTTTATCCAGCAAACTTCCAAGGCAGCAACCCGGTTCTCTTAGAAGCTCCTGTAGACTCTTCACCCCTTATTAGAAGCAACTCAGTGCCAACTTCTTCAGCAACTAATCTAACTATTCCTCCTTCTTTGAGAGGAAGTCACTCATTTGATGAAAGGATGACTGGTTCCGACGATGTATTCTATCCAGGGACCGTGGGCATACCCCCTCAGCGCATGCTAAGAAGACAAGCGGCATTTGAGCTGCCTTCGGTACAGGAGGGCCACGTGGAAGTCGAGCACCATGGCAGGATGTTGAAGGGTATCAGCAGTTCATCCCTGAAGGAAAAGAAATTGTCTCCTGGGGACAGGGTTGGGTATGACTATGATGTCTGTCGGAAACCCTATAAGAAGTGGGAGGACTCTGAAACACCAAAGCAAAACTACAGGGACATTTCCTGCTTGAGTTCTTTAAAGCATGGTGGAGAATATTTCATGGATCCCGTGGTGCCATTGCAGGGAGTACCAAGCATGTTTGGAACTACCTGTGAAAACAGGAAACGCCGGAAAGAGAAGAGCGTAGGGGATGAAGAGGACACGCCCATGATCTGCAGCAGCATTGTAAGCACTCCTGTGGGCATCATGGCTTCCGATTATGACCCCAAACTGCAGATGCAGGAAGGAGTCAGGAGTGGATTTGCCATGGCTGGACACGAAAACCTTTCTCATGGTCACACGGAACGCTTTGACCCATGTCGGCCCCAACTGCAGCCTGGAAGTCCATCTCTTGTGTCAGAGGAGTCACCTTCAGCCATTGATTCAGACAAGATGTCAGACCTAGGGGGCAGGAAACCTCCTGGAAATGTGATTTCTGTGATTCAGCACACCAACTCACTGAGCCGACCCAATTCATTTGAAAGGTCTGAGTCAGCCGAACTTGTGGCTTGCACACAGGATAAAGCCCCTTCCCCTTCAGAGACTTGTGACAGTGAGATTTCAGAAGCCCCAGTGAGTCCTGAGTGGGCTCCACCTGGGGATGGTGCAGAAAGTGGGGGGAAACCCTCTCCATCTCAGCAGGTGCAGCAGCAGTCCTATCACACACAGCCCAGGCTAGTTCGGCAACACAACATCCAGGTTCCTGAGATTCGAGTGACCGAGGAGCCTGATAAACCTGAGAAGGAGAAGGAAGCCCAGAGCAAAGAGCCAGAGAAGCCTGTGGAAGAATTTCAGTGGCCCCAGAGAAGTGAGACCCTTTCCCAGCTCCCCGCGGAGAAGTTGCCACCCAAAAAGAAGCGTCTGCGACTTGCAGATATGGAGCACTCCTCAGGGGAGTCCAGCTTTGAATCCACAGGCACAGGCCTCTCCCGCAGCCCCAGCCAAGAAAGCAACTTGTCCCACAGCTCCAGTTTCTCCATGTCTTTTGAAAGAGAAGAAACCAGTAAGCTTTCTGCACTTCCTAAGCAGGATGAGTTTGGGAAGCATTCAGAGTTTCTGACTGTCCCTGCTGGTTCATACTCATTGTCTGTCCCAGGCCATCACCACCAGAAAGAGATGCGACGCTGCTCATCAGAGCAGATGCCTTGTCCTCACCCAGCGGAAGTCCCAGAAGTTCGGAGCAAATCATTTGATTATGGGAATCTGTCCCATGCTCCTGTGTCGGGAGCAGCAGCCTCCACGGTATCACCGTCCAGGGAGAGGAAGAAATGCTTTCTGGTGCGGCAAGCTTCCTTCAGTGGCTCCCCAGAAATCTCCCAGGGCGAGGTTGGCATGGATCAGAGCGTGAAGCAAGAGCAGCTGGAGCACCTGCATGCTGGCCTCCGGTCCGGGTGGCACCATGGCCCGCCTGCTGTGCTGCCTCCTCTTCAGCAAGAGGACCCAGGGAAGCAGGTGGCGGGTCCTTGTCCCCCGCTGAGCTCGGGGCCACTGCACCTGGCCCAGCCACAGATCATGCACATGGACAGTCAGGAATCTTTGAGAAATCCCTTGATCCAACCAACATCCTATATGACAAGCAAGCACTTACCTGAACAGCCACACTTATTTCCACATCAAGAGACAATTCCATTTTCTCCAATCCAGAATGCCTTGTTTCAGTTTCAGTATCCTACAGTTTGTATGGTTCATTTACCAGCTCAGCAGCCTCCCTGGTGGCAGGCACATTTCCCACATCCCTTTGCTCAGCACCCTCAGAAGAGCTATGGCAAGCCCTCTTTTCAGACAGAAATCCATTCGAGCTATCCCTTAGAGCATGTGGCAGAGCACACTGGAAAGAAACCTGCTGAGTATGCACACACGAAAGAGCAGACCTACCCATGTTATTCAGGAGCATCAGGGCTACACCCAAAGAACCTTCTTCCAAAGTTTCCATCAGACCAGAGCAGTAAGTCAACTGAAACGCCCTCTGAGCAGGTTCTTCAAGAAGATTTTGCCTCGGCAAATGCTGGGTCTTTGCAGTCCCTCCCAGGAACAGTGGTTCCTGTTCGGATCCAGACGCACGTACCATCCTATGGAAGTGTCATGTACACAAGCATTTCTCAGATACTTGGGCAGAATAGCCCTGCCATTGTCATATGCAAAGTCGATGAGAATATGACCCAAAGGACACTGGTCACCAACGCAGCCATGCAAGGGATAGGATTCAACATTGCCCAGGTGCTGGGGCAGCATGCGGGCTTGGAGAAGTACCCCATTTGGAAAGCACCTCAGACTTTGCCCCTCGGCTTAGAATCCTCCATCCCCTTGTGTTTACCTTCCACCTCTGACAGCGTGGCCACCCTGGGAGGTAGCAAGCGAATGCTTTCTCCAGCCAGTAGCTTGGAGCTCTTCATGGAAACCAAGCAGCAGAAAAGGGTCAAAGAAGAAAAGATGTACGGACAGATTGTGGAGGAGCTTAGTGCTGTGGAGCTGACCAACTCAGACATCAAAAAGGACCTCTCCCGCCCCCAGAAACCCCAGCTGGTTCGACAAGGATGTGCTTCTGAGCCAAAAGATGGCTTGCAGTCAGGGTCATCTTCCTTCTCCTCGCTGTCGCCCTCCTCATCTCAAGACTATCCTTCTGTTAGCCCGTCTTCCAGGGAGCCATTCCTGCCCAGCAAGGAGATGCTTTCCGGTTCCCGGGCACCACTTCCGGGGCAGAAGTCCAGTGGGCCTTCTGAAAGCAAAGAATCTTCAGATGAATTAGATATCGATGAGACGGCATCGGACATGAGCATGAGCCCACAGAGTTCTTCATTACCAGCAGGAGATGGTCAGCTGGAAGAGGAAGGGAAGGGCCACAAGCGGCCTGTTGGCATGCTGGTCCGCATGGCCTCTGCCCCCAGCGGGAACGTGGCAGACTCAACTCTTCTTCTCACGGACATGGCAGATTTCCAGCAGATTCTTCAGTTCCCCAGTCTGCGGACAACAACTACTGTGAGTTGGTGCTTCTTGAATTATACAAAACCCAATTATGTGCAACAGGCCACCTTCAAATCCTCGGTTTATGCTTCATGGTGCATTAGTTCCTGTAATCCAAACCCATCAGGATTGAACACCAAGACCACGCTGGCTCTTCTGAGGTCCAAGCAAAAAATCACTGCAGAAATTTATACTCTGGCTGCTATGCATAGGCCTGGAACCGGCAAGCTTACATCATCAAGTGCTTGGAAGCAGTTTACTCAG
Seq A exon
GTAACAAATACTGTTTTAGGAAGAACTTTGTATTGTGGATTTGATTGCTGAGCAGACTACATAGTGAAGGATATAAGGCCTAAAAAAAAAATACAAGTAAAATGAAGGTCAGTGTGGGGGCGTTTTCAGAAAGTCTGGCCTTACTCAGGAGTGGAAGAAGCCACTGACTGCACTTGGTTCTGAGGTCTCAGGCATGGTCCATTTTCAGAAGAAAAAGCCTACATTTATGCTTTTAAAATTTAAAAATTTGGGTGCCATGAAATCCTACCACTGGGATTAATTCCCATGGGTTATTTTCCTTCTGACCTTTGTGAGTGACCTAGCAGGTCTAATTTTCTCTGGATGTGAGGAATTCAGGGAATTGTGAAGTGGGCCATAGAGCAGGGAATGGAGGCTGAAAGGAAAGACGAAGAAGGAGGACCGAGCTTTGCAAATGCTGCAGGGCTTACTCTCATTGACGAGACATCTGTCTCCTTCAAAACTTATTTTTCCAAGTTGCTGGCTGGTTTATTCCTACAAGAACCATCAATGCCTTCCATGTAAAATTATAAAAATATTAAGGGGAATTTTGAAATTTCTGCTAAATTAATAAGGAGGCAAATAGAGGATTTAAAAATATGTTTTCACTTTTATCAGTTACCATTTTCCCTTCAATAATTTTTGAGACTACTTCCTTAATTAATATAGATTGTTTTCATTGCTACTTCAAAACATAGAATGTGTCTTTTAAGTATTAGCATTGCACAGAGTGCTGAGTGTATATGTGTATCTATATATTTTTATATATAATATATGTACTTATTATATATAGCTGTAACAGAATGTTGAATTTATTCAGTGGAAACTGTCATTCTTATCTGATTTTATCCCTAGTGGTCCTTATTTTATATAACTAGTTCCTGGCCTTTTAGTACAGAATTTAGGCTCATTTTCAGAGATGATGGAAGAGTGGGACATAGGGGCTCCTGTGTCTTGGAGAAAGCATGTGAAATGATTCTCTCTTCTTGTCTTACAG
Seq C2 exon
ATGAAACCTGATGCGTCCTTTTTATTTGGCAGCAAACTAGAAAGGAAACTAGTGGGAAATATCTTAAAGGAAAGAGGGAAAGGAGATATTCATGGAGATAAAGATATTGGATCCAAACAAACTGAGCCAATCCGAATTAAAATATTTGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010818-HIVEP2:NM_006734:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=1.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACAGGCCACCTTCAAAT
R:
CGGATTGGCTCAGTTTGTTTGG
Band lengths:
343-1358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)