DreALTA0014338-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000058660 | ilf3a
Description
interleukin enhancer binding factor 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3151]
Coordinates
chr6:8139481-8141159:-
Coord C1 exon
chr6:8141079-8141159
Coord A exon
NA
Coord C2 exon
chr6:8139481-8139668
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
CCTGTGGTTTCTCCTAGAAGAAA
3' ss Score
2.56
Exon sequences
Seq C1 exon
TGCCTGATCCTCCAATAAAGAGACCAAGGGAATCTTTTGATGGTGGGGATTTTGATACTAGGCTGAAGTTTCCAAGAAAAG
Seq A exon
NA
Seq C2 exon
AAAGGAAAGAGCCACCAAATGCCCTGATGAAGCTAAATCAACTGCGTCCTGGGACTGTTTACAAATTGGCATCACAGACTGGGCCTGAACATGAGCCTCAGTTCTCAATGACTGTAGAGGTGGATGGGGTAACATATGAGGCAACAGGCCCTTCCAAACGCAGCGCCAAGCTCCATGTTGCCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058660-17-21,17-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.890
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003520=dsrm=PU(90.3=88.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGGAATCTTTTGATGGTGG
R:
AGCTTCATCAGGGCATTTGGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]