DreALTA0014338-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000058660 | ilf3a
Description
interleukin enhancer binding factor 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3151]
Coordinates
chr6:8139481-8141159:-
Coord C1 exon
chr6:8141079-8141159
Coord A exon
chr6:8139669-8139671
Coord C2 exon
chr6:8139481-8139668
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
GTACCTGTGGTTTCTCCTAGAAG
3' ss Score
6.53
Exon sequences
Seq C1 exon
TGCCTGATCCTCCAATAAAGAGACCAAGGGAATCTTTTGATGGTGGGGATTTTGATACTAGGCTGAAGTTTCCAAGAAAAG
Seq A exon
AAG
Seq C2 exon
AAAGGAAAGAGCCACCAAATGCCCTGATGAAGCTAAATCAACTGCGTCCTGGGACTGTTTACAAATTGGCATCACAGACTGGGCCTGAACATGAGCCTCAGTTCTCAATGACTGTAGAGGTGGATGGGGTAACATATGAGGCAACAGGCCCTTCCAAACGCAGCGCCAAGCTCCATGTTGCCCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058660-17-21,17-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.890
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003520=dsrm=PU(90.3=88.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGGAATCTTTTGATGGTGG
R:
AGCTTCATCAGGGCATTTGGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]