DreALTA0014343-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13700160-13703739:+
Coord C1 exon
chr3:13700160-13700340
Coord A exon
NA
Coord C2 exon
chr3:13703592-13703739
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTCAAATATCTTTCCAGCAGCTC
3' ss Score
4.56
Exon sequences
Seq C1 exon
TGAGCCAAGCACCGGGGAGCAGGCAACCCGTTCCCTGCGCGGAGTCATGCGTGTGGGGCTGGTAGCTAAAGGCCTTCTCCTGAAGGGAGATCTCGACCTGGAGCTTGTGCTGCTGTGCAAAGAGAAACCCACTATCACCCTGCTAAAGAAAGTGTCTGATAACCTGGCTGTGCAGCTAAAG
Seq A exon
NA
Seq C2 exon
CTCGTCACTGAGGAAAAATATGATGTTAAACCGTGCATCCGCGATGCCACCATTGTCATCAAAAATGCCAAAGAGCCTCCGCTGACCCTCACCATTCACCTGACTTCACCACTCGTGAGGGAGGAGGTTGAGAAGCAGGCTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177-5-9,5-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=NA C2=0.099
Domain overlap (PFAM):
C1:
PF075289=DZF=PU(34.7=70.5)
A:
NA
C2:
PF075289=DZF=FE(39.5=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCCACTATCACCCTGCT
R:
GCGGATGCACGGTTTAACATC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]