DreALTA0014343-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13700160-13703739:+
Coord C1 exon
chr3:13700160-13700340
Coord A exon
chr3:13703589-13703591
Coord C2 exon
chr3:13703592-13703739
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AATCTCAAATATCTTTCCAGCAG
3' ss Score
4.87
Exon sequences
Seq C1 exon
TGAGCCAAGCACCGGGGAGCAGGCAACCCGTTCCCTGCGCGGAGTCATGCGTGTGGGGCTGGTAGCTAAAGGCCTTCTCCTGAAGGGAGATCTCGACCTGGAGCTTGTGCTGCTGTGCAAAGAGAAACCCACTATCACCCTGCTAAAGAAAGTGTCTGATAACCTGGCTGTGCAGCTAAAG
Seq A exon
CAG
Seq C2 exon
CTCGTCACTGAGGAAAAATATGATGTTAAACCGTGCATCCGCGATGCCACCATTGTCATCAAAAATGCCAAAGAGCCTCCGCTGACCCTCACCATTCACCTGACTTCACCACTCGTGAGGGAGGAGGTTGAGAAGCAGGCTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177-5-9,5-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=NA C2=0.099
Domain overlap (PFAM):
C1:
PF075289=DZF=PU(34.7=70.5)
A:
NA
C2:
PF075289=DZF=FE(39.5=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCCACTATCACCCTGCT
R:
GCGGATGCACGGTTTAACATC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]