DreALTA0014924-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062565 | kcnh4a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4a [Source:ZFIN;Acc:ZDB-GENE-131125-34]
Coordinates
chr3:17397732-17414628:+
Coord C1 exon
chr3:17397732-17397807
Coord A exon
chr3:17414395-17414398
Coord C2 exon
chr3:17414399-17414628
Length
4 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
TCTGTATTTGTTGTGTACAGACA
3' ss Score
6.59
Exon sequences
Seq C1 exon
ATGCCGGTGATGAAAGGGCTCCTGGCCCCTCAGAACACCTTTCTCGACACCATCGCCAAACGCTTTGATGGGACGC
Seq A exon
ACAG
Seq C2 exon
TAACTTCCTGCTGGGGAATGCTCAGGGGAGTCGCGGATACCCCATCGTGTACTGTTCAGACGGCTTCTGCGAGCTCACAGGCTTTGCGCGCACTGAGGTAATGAAGAAGACGTGCACATGTCAGTTTCTGCATGGACAGGAAACAAGCGAGAGAGTCACTCAGCAGGTGGAGAAAACCTTGGAAGGACAGAGAGAGTTCCAGACAGAGGTCTGCTATTACAGGAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062565-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134261=PAS_9=PU(69.5=92.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCCAAACGCTTTGATGG
R:
AAGCCGTCTGAACAGTACACG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]