GgaALTA1017146-3/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003354 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr27:4854135-4856867:-
Coord C1 exon
chr27:4856792-4856867
Coord A exon
chr27:4854318-4854346
Coord C2 exon
chr27:4854135-4854317
Length
29 bp
Sequences
Splice sites
5' ss Seq
CACGTAGGG
5' ss Score
3.12
3' ss Seq
GCAGCTGTGTCTCCTTTCAGACA
3' ss Score
8.51
Exon sequences
Seq C1 exon
ATGCCGGTGATGAAGGGTCTGCTGGCACCGCAGAACACCTTCCTGGACACCATCGCCACCCGCTTCGATGGCACAC
Seq A exon
ACAGCAATTTCATCCTGGCCAACGCTCAG
Seq C2 exon
GTCCGCCGTGGCTTCCCCATTGTCTACTGCTCTGACGGCTTCTGCGACCTGACCGGCTTTGCCCGCACCGAGGTGATGCAGAAGAACTGCAGCTGCCGCTTCCTGAGTGGGGCTGAGACCAGCGAGCCCGTCCTGCAGCGCATTGAGAAGGTGCTGGAGGGCAAGCAGGAGCAGCAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-0-3,0-2,0-1,0-0-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134261=PAS_9=PU(70.6=97.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGAAGGGTCTGCTGGC
R:
AGAAGCCGTCAGAGCAGTAGA
Band lengths:
113-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]