DreALTA0014954-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000079484 | kcnt1
Description
potassium channel, subfamily T, member 1 [Source:ZFIN;Acc:ZDB-GENE-091231-1]
Coordinates
chr21:4714413-4717769:-
Coord C1 exon
chr21:4717478-4717769
Coord A exon
chr21:4714473-4714475
Coord C2 exon
chr21:4714413-4714472
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
3' ss Seq
ACTTTTTTCCATTGGTTTAGAAG
3' ss Score
7.01
Exon sequences
Seq C1 exon
CTTCAAAGCTCAGTCAGCATAGACGGTTTAAACGACACTAGAGAGAAAGGCGAGGAGTCAAAGATCCTCACCCGGAGCTCCTCAAGCAGCGACCAATCAGATCACCCACTGCTGAGAAAGAAGAGCATGCATTGGACAAGACGTCTCAGTAGGCGGAGTGTAAAGCGGAGCGACTCCTCCCTCAGCTCCATCCAGCAGCGTCTGGGTGTGTTACGGCGCTCTGAGAGGGAGGAGCTTACTGAACTGGTCAGAAACCGCATGCAGCATTTAGGCCTGCACACTGGCGGATACA
Seq A exon
AAG
Seq C2 exon
ATGTCACAAATTTAACAGCCAGTGATGTGATGAATCGGGTTAATTTGGGCTATTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079484-30-36,30-35-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.612 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGGAGCTTACTGAACTGG
R:
CCGATTCATCACATCACTGGCT
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]