DreEX0041032 @ danRer10
Exon Skipping
Gene
ENSDARG00000079484 | kcnt1
Description
potassium channel, subfamily T, member 1 [Source:ZFIN;Acc:ZDB-GENE-091231-1]
Coordinates
chr21:4713560-4717769:-
Coord C1 exon
chr21:4717478-4717769
Coord A exon
chr21:4714413-4714475
Coord C2 exon
chr21:4713560-4713644
Length
63 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTCCATTGGTTTAGAAG
3' ss Score
7.01
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CTTCAAAGCTCAGTCAGCATAGACGGTTTAAACGACACTAGAGAGAAAGGCGAGGAGTCAAAGATCCTCACCCGGAGCTCCTCAAGCAGCGACCAATCAGATCACCCACTGCTGAGAAAGAAGAGCATGCATTGGACAAGACGTCTCAGTAGGCGGAGTGTAAAGCGGAGCGACTCCTCCCTCAGCTCCATCCAGCAGCGTCTGGGTGTGTTACGGCGCTCTGAGAGGGAGGAGCTTACTGAACTGGTCAGAAACCGCATGCAGCATTTAGGCCTGCACACTGGCGGATACA
Seq A exon
AAGATGTCACAAATTTAACAGCCAGTGATGTGATGAATCGGGTTAATTTGGGCTATTTGCAAG
Seq C2 exon
ATGAGTTGAATGACCAGCAGAACTCCATCTCATATGTGCTCATAAACCCCGCCCCCGACACACTGCTGCAGCTCAATGATGTCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079484_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.612 A=0.500 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGGAGCTTACTGAACTGG
R:
ATCATTGAGCTGCAGCAGTGT
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]