RnoEX0046228 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3358476-3363244:+
Coord C1 exon
chr3:3358476-3358806
Coord A exon
chr3:3360053-3360115
Coord C2 exon
chr3:3363157-3363244
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTATGTGTTCCATAGAGG
3' ss Score
8.67
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TCTCAGATCTCGGTGAACATGGAGGATTGCGAGGACACTCGGGAGGCCAAGGGGCCCTGGGGCACACGGGCTGCGTCTGGCGGTGGCAGCACCCATGGCCGTCACGGGGGCAGTGCTGACCCGGTGGAGCACCCACTACTGCGCCGCAAGAGCCTGCAGTGGGCCCGCAAGCTGAGCCGCAAGAGCAGCAAGCAGGCGGGGAAGGCACCCATGACCACAGACTGGATCACCCAGCAGCGACTCAGCCTGTACCGGCGCTCAGAGCGCCAGGAGCTCTCGGAGCTGGTCAAGAACCGAATGAAGCACCTGGGGCTGCCCACCACTGGCTACG
Seq A exon
AGGACGTAGCAAATTTAACAGCCAGTGATGTGATGAATCGGGTAAACCTGGGATATTTGCAAG
Seq C2 exon
ATGAGATGAATGATCATCACCAGAACACCCTTTCCTATGTACTCATCAACCCCCCGCCAGACACAAGACTGGAGCCCAACGATATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=0.409 C2=0.590
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCGGAGCTGGTCAAGAAC
R:
GTTGGGCTCCAGTCTTGTGTC
Band lengths:
138-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]