BtaEX0018893 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103433003-103437846:+
Coord C1 exon
chr11:103433003-103433327
Coord A exon
chr11:103434687-103434749
Coord C2 exon
chr11:103437762-103437846
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTGTGTGTTCCGTAGAGG
3' ss Score
10.39
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TCCCAGGTCTCGGTGAGCGTGGAGGACTGTGAGGACACTCGGGAGGCAAAGGGGCCCTGGGGTGCACGGGTGGGCACGAGCGGCGGCAGCACCCACGGCCGGCACACGGTGGGCAGCGACCCAGCCGAGCACCCGCTCCTGCGGCGCAAGAGCCTCCCGTGGGCGCGGAGGCTGAGCCGCAAGGGCTCCCGGCACACGGGGAATGCGGCAGCCGAGTGGATCAGCCAACAGCGGCTCAGCCTGTACCGGCGCTCCGAGAGGCAGGAGCTCTCAGAGCTGGTCAAGAACCGCATGAAGCACCTGGGGCTGCCCACCAGTGGCTACG
Seq A exon
AGGATGTAGCAAATTTAACAGCCAGTGATGTCATGAATCGGGTAAACCTGGGATATTTGCAAG
Seq C2 exon
ACGAGATGAATGACCACCAGAACACCCTCTCCTATGTGCTCATCAACCCCCCGCCCGACACGCGGCTGGAGCCCAATGACATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=0.455 C2=0.552
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAAGAACCGCATGAAGCA
R:
ACAATGTCATTGGGCTCCAGC
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development