GgaEX0001936 @ galGal3
Exon Skipping
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8907906-8911574:-
Coord C1 exon
chr17:8911271-8911574
Coord A exon
chr17:8909948-8910010
Coord C2 exon
chr17:8907906-8907990
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTGTATGTTCTGTAGAGG
3' ss Score
8.21
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TCACAGATCTCCATCAACGTGGAGGACTGCGAGGACACGAAGGACGTGAAGGAGCACTGGGGCATCAAGACGGGCCACCACAGGAACTCGTGCTCCAGTGACCAATCCGAGCACCCGCTGCTGCGGCGCAAGAGCATGCAGTGGGCACGGCGGCTGAGCAGGAAGGGCAACAAGCACTCTGGCAAGACAGCCGAGTGGATCAGCCAGCAGCGGCTCAGCCTGTACCGCCGCTCCGAGCGGCAGGAGCTGTCCGAGCTCGTCAAGAACCGCATGAAGCACCTGGGTTTGCCCACCACCGGGTACG
Seq A exon
AGGATGTAGCAAATTTAACAGCCAGTGATGTGATGAATCGGGTAAACCTGGGATATTTGCAAG
Seq C2 exon
ATGAGATGAATGACCACCAGAACACTTTGTCCTACGTCCTGATCAACCCACCCCCAGACACACGGCTGGAGCTGAACGACATCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.418 A=0.364 C2=0.529
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCGAGCTCGTCAAGAAC
R:
GATGTCGTTCAGCTCCAGCC
Band lengths:
141-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]