GgaINT0123780 @ galGal3
Intron Retention
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8907906-8910010:-
Coord C1 exon
chr17:8909948-8910010
Coord A exon
chr17:8907991-8909947
Coord C2 exon
chr17:8907906-8907990
Length
1957 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CCCCTCCTCTCCTCCGACAGATG
3' ss Score
11.63
Exon sequences
Seq C1 exon
AGGATGTAGCAAATTTAACAGCCAGTGATGTGATGAATCGGGTAAACCTGGGATATTTGCAAG
Seq A exon
GTAATGCTCACTCCCTGGGAGTCACGCGTGCCTCACGGCGTGCAGCGTACAACAAGATCATGCCAGCTGAGCCCAGTCCACACCCTTGCCAGTTTTCACCTTAGATACTCAATCCTTTCACGCTCCTTTGTTGGGTGGAGCTGGAAAACAAAAGGCACTGCACTGCAGCTGCAGGGCTCCCTGATGTCAGGAGAGAACAACTCAGGGACCCTTTGGAACTGGTGCCAGGAAATCACATCCCTCAGCTGTTACTGATAGCGACCTCCTTGCATTGCTCTGCAGGTTGACTTTGGCCTGCAAAGCCCGGAGCAGTTCAAGGAGGGGGGTTTCTGTCTGCTGCTGCTGAGCAAAGCAGTGTGGGAGGGCATCGTTTGCAGCTTTGTCCTGGGTTGGTTTGGGGTGCAGACCCGCGTGTCCCTGCAGTCATCCCCAGACCCTGGGGAGAGGCTCAGGGTGAAGGGACGCAGCACCCAGTGCTCAGCGCACAGCTTCATGCAGAGGAGCTCAGGAGAGCCCAGGGGCAGCCGTGGCCCTGCTGGGCTGTGGTTCAGGCTTTGCCAGCCCGTGCTTAAGGTGAAAAGTTGGCATTTTCCTACAAACTGTGTCCACCCTCAGAGCCCCAGCCCAGCCGTGGCTCATGGAAGCCCCATGCAATATATTGCCAGCAGCCGCCGGGGCTGCACAGAGCTCAGGGATGGTGTTCCCCCACCCTTGGATGTGTTCTGGCACAGCTGTGAGCCACCCCACCAGTGCCTTCTGCAGAGTGGGCACCACTGTGTGGGTGCAGGAGCTCTGGATCCCCTCCCCCCCCAAAATTATCTGGGGGTGCCAGCTGGGATAAGATGATGGCAATACGCGTGGCGGGTTCAGCAGTGCTGCATGGGGGTCAGGAAAAGGTGCTTCCATGGTGCAGGAGAACCTGTGTGCCCCGGGAACCCCCCCTCCATTACAGCACATCCCATGCATCCCCGGCTCTGTGTGCGCCCCAGCACTGCCACCCCCATCCCTGCTGCGCTGCAGGGCTGAGCACCGGGACGGCTGAGAGCTGTCAGCTCTGCGGTCTGGGAAGCAACCAGGGGGTAGGCAGCAAAAAGCAGAGGGGCAGGAAAGAGGAGAGGTCTGTGTGCAGATCCTCCCTGTGTTCCCCATCACGCCAGGCACTGCTGGCGTCCCGGTGCACAGCCCTGCAGCAAGCCCATGTCCGTCTGTCCCCTGCTGTGCGTCCCCTGTCCTGTCCATCACATGCCCTCGCTGTGCTCCCGCTGCTGCTTGTTCCCAGCACCTGCTTCCCCCATGATCTTGTTTGGCAGCAAAGGGCCCCGCGTGTCCCAGTGCTCGGTTTAGCATCACCGCAGCTCCACGATTCAGAGCCGTTCCCCAGCGGTGCTGTGGGCTCTGGGATGCCGCAGTGATGTCCCGCGGGCAGAAGGGCATGGTGCCTCGGCCACGAGCTGCTCGGTGCTCATAGGTGCAACAAGGGAAGAAGGTGGCAAAGCGTGGTCACGGCCCTGGGGGGGTTTGGCTGCCCTGACCCGGTGCTCGGGGTCGTTGTGCTGTACTTAATGCAGCAAGACTAACGTGTTTCATTTTTTGTGCTCCAACAAGGTAAGACATCTTTTTTCTTATTTCTTTTTGGGGGTTGATTTTTGAAGTGAAAAGTCTGTGAGTCTCCGGCCTGTGCCATGGCTGGGAGCAGCTGCGGGGCTGTGGGAGGAGGTGGCGGTGCTCTCAGCGGCATGGCCATGCTACAGGACCTGGTGCTGTCCGCAGGGATCAGCTGCGACCCTACTGAGCCTGATGCTTGGGGCTGCTGCAGTGGGGCTGCCAGGGCTTCCACTGCGGTGCCCATCGGGGTGTCCATTGGAGTGCCCATTGGGGCATCCATCGGGGTGTCCATTGGGTGTCCATCAGGGCTCTCCGCCAGCCCTGCCCAGCATCCCCTCCTCTCCTCCGACAG
Seq C2 exon
ATGAGATGAATGACCACCAGAACACTTTGTCCTACGTCCTGATCAACCCACCCCCAGACACACGGCTGGAGCTGAACGACATCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.529
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]