DreEX0005336 @ danRer10
Exon Skipping
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64903697-64915608:+
Coord C1 exon
chr5:64903697-64903982
Coord A exon
chr5:64908441-64908503
Coord C2 exon
chr5:64915524-64915608
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCCTGCACGCTGTAGAGG
3' ss Score
4.66
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGTCTGTGGAGGATTGCGAGGACCAGCGGGACCACAGGGAATCCTGGAAAGAGAAAACTGCCCATAGGAACTCCACAGGGAGCGACCAATCAGAGCATCCGCTCCTGCGCAAGAAAAGCATGCAGTGGGCGAGACGCCTAAGCAGAAAAAACACCAAACCTCCCAGTCGAGCTGAACGCATCAATCAACAGCGCCTGAACCTGTACCGGCGCTCCGAGAGGCAGGAGCTGTCAGAGCTGGTGAAGAACCGCATGAAGCATTTAGGCCTGCCCACTGTGGGATACG
Seq A exon
AGGACGTAGCTAATTTAACCGCAAGCGATGTGATGAACCGAGTAAATCTGGGATATTTGCAAG
Seq C2 exon
ATGAAATGAATGACAATCAGAACACGTTGTCATATGTGCTGATAAACCCTCCGCCGGACACCATTCTGGAGCTCAATGACATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868_MULTIEX2-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.635 A=0.379 C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCAGAGCTGGTGAAGAA
R:
TTGAGCTCCAGAATGGTGTCC
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]