DreEX0005328 @ danRer10
Exon Skipping
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64908441-64915608:+
Coord C1 exon
chr5:64908441-64908503
Coord A exon
chr5:64915131-64915142
Coord C2 exon
chr5:64915524-64915608
Length
12 bp
Sequences
Splice sites
3' ss Seq
ACCTGGCCTGGCGCTATAAGTGG
3' ss Score
-0.02
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGGACGTAGCTAATTTAACCGCAAGCGATGTGATGAACCGAGTAAATCTGGGATATTTGCAAG
Seq A exon
TGGCTCAAACAG
Seq C2 exon
ATGAAATGAATGACAATCAGAACACGTTGTCATATGTGCTGATAAACCCTCCGCCGGACACCATTCTGGAGCTCAATGACATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868-MICROEX3
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=1.000 C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000159921fB479
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGCAAGCGATGTGATGAA
R:
GCGGAGGGTTTATCAGCACAT
Band lengths:
101-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]