DreALTA0016103-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000035682 | ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060526-130]
Coordinates
chr5:36977132-36977563:+
Coord C1 exon
chr5:36977132-36977272
Coord A exon
chr5:36977522-36977551
Coord C2 exon
chr5:36977552-36977563
Length
30 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCTCTGTATATCTCTTTAGTAA
3' ss Score
7.1
Exon sequences
Seq C1 exon
GAATTGATGAATGTCAGGACCCTGCAAATTGCAAAAATGGCCAGTGTGTAAACACCCAAGACTCCTATTATTGCCTGTGCTCTCCTCCCTGGACTCTGGCAAGCGACCGTAACAGCTGTGTCACACCTGAAGAGCAGGCAG
Seq A exon
TAATGGGTGTGTCTGTGGTGCACCTTACAG
Seq C2 exon
ATGTGAATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035682-28-32,28-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=83.3)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]