DreEX0044086 @ danRer10
Exon Skipping
Gene
ENSDARG00000035682 | ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060526-130]
Coordinates
chr5:36977132-36978926:+
Coord C1 exon
chr5:36977132-36977272
Coord A exon
chr5:36977522-36977680
Coord C2 exon
chr5:36978765-36978926
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTATATCTCTTTAGTAA
3' ss Score
7.1
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GAATTGATGAATGTCAGGACCCTGCAAATTGCAAAAATGGCCAGTGTGTAAACACCCAAGACTCCTATTATTGCCTGTGCTCTCCTCCCTGGACTCTGGCAAGCGACCGTAACAGCTGTGTCACACCTGAAGAGCAGGCAG
Seq A exon
TAATGGGTGTGTCTGTGGTGCACCTTACAGATGTGAATGAATGTGAGGATCCCTCCTACTGTAGGAACGGGAGATGTGTCAACACTCCCGGCTCCTTCCACTGCATTTGCACGCAGCCACTCACCTTTAGTGCAGCCCTCAAGCAATGCGTCTATGATG
Seq C2 exon
ACCGCACTGCCGCACATAAGGACATCTGTTTCCAGGAGGTTGATGAGGATCATATGTGCACGATGCCACGGAATGAGCTCACAGTGACATACTCGGAGTGCTGCTGTCATTATGGTCGAGGCTGGGGCCCAGAGTGCAGGACCTGTCCCATGAGAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035682_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=83.3)
A:
PF0764510=EGF_CA=WD(100=74.1)
C2:
PF0068312=TB=PU(86.0=67.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGGACCCTGCAAATTGC
R:
CCCAGCCTCGACCATAATGAC
Band lengths:
256-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]