DreALTA0016559-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000016085 | mbnl3
Description
muscleblind-like splicing regulator 3 [Source:ZFIN;Acc:ZDB-GENE-081002-3]
Coordinates
chr14:30652913-30658547:-
Coord C1 exon
chr14:30658453-30658547
Coord A exon
chr14:30653014-30653016
Coord C2 exon
chr14:30652913-30653013
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
TGTTTGTACCTGTCTTCCAGTAG
3' ss Score
7.3
Exon sequences
Seq C1 exon
TTCCCATGATGCACGGTGCCACCACTTCCACTGTTTCGTCGGCTACGACCCCAGTCACCAATGTTCCTTTTGCTGAATCAGCCACCTCCAACCAG
Seq A exon
TAG
Seq C2 exon
ACGCCGCCGAGGTACTGAGCGCCGACCCCATCGACCTCCAGTGCGTCCCTATGGAGGCCCATTTCTGTCCCGTTCCTAAACTCCTGGTGGCCGCACCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016085-13-10,13-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.883 A=NA C2=0.829
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCAGCCACCTCCAACCAG
R:
CCAGGAGTTTAGGAACGGGAC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]