DreEX0045314 @ danRer10
Exon Skipping
Gene
ENSDARG00000016085 | mbnl3
Description
muscleblind-like splicing regulator 3 [Source:ZFIN;Acc:ZDB-GENE-081002-3]
Coordinates
chr14:30652798-30673810:-
Coord C1 exon
chr14:30673660-30673810
Coord A exon
chr14:30658453-30658547
Coord C2 exon
chr14:30652798-30653013
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTGACTCGCCTGAAAAAAGTTC
3' ss Score
-1.08
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GCTCTGCCACCAGGAGCCATGCAGCAGCTACCAAAGAGACCGACCCTGGAGAAGAGCAACGGCGCTGCTGCCGTCTTCAACCCCAGCATGTTCCACTACCAGCAGGCGTTAGCCAGCATGCAGCTGCAGCAGCCAGCGTTCATTCCCACAG
Seq A exon
TTCCCATGATGCACGGTGCCACCACTTCCACTGTTTCGTCGGCTACGACCCCAGTCACCAATGTTCCTTTTGCTGAATCAGCCACCTCCAACCAG
Seq C2 exon
ACGCCGCCGAGGTACTGAGCGCCGACCCCATCGACCTCCAGTGCGTCCCTATGGAGGCCCATTTCTGTCCCGTTCCTAAACTCCTGGTGGCCGCACCCATGACACTGAATCCAGTAAGCCTCTCCCGCAATCCCACAACCTAATCAGGCCCATCGCTCACGCACCATGCTCCCAAACATAACAGAAAAATGAATGCAACAAACGTGTGCCTAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016085_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.422 A=0.883 C2=0.791
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACCCCAGCATGTTCCAC
R:
GCCACCAGGAGTTTAGGAACG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]