MmuEX0028110 @ mm9
Exon Skipping
Gene
ENSMUSG00000036109 | Mbnl3
Description
muscleblind-like 3 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444912]
Coordinates
chrX:48473257-48482248:-
Coord C1 exon
chrX:48482098-48482248
Coord A exon
chrX:48476994-48477088
Coord C2 exon
chrX:48473257-48474195
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCATGATTTCCTACTGCAAGTGC
3' ss Score
1.5
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GCCCTGCCGCATGGTGCACTTCAACTGATACCAAAGAGGTCAGCCCTTGACAAGGCCAATGGTGCCACTCCAGTCTTTAACCCCAGTGTTTTCCACTGCCAACAGGCTCTGGCTAACATGCAGATTCCTCAGCAGGCTTTTATCCCAACAG
Seq A exon
TGCCCATGATGCACGGTGCTACACCTTCCACTGTGTCTACAGCAACACCACCTGCCAGCAACGTTCCCTACGTTCCAACAACTACAGGCAACCAG
Seq C2 exon
TTGAAATATTGAGCAGCAGAGTTACAGAGTATCAGAATCTCTCAACAAGAAACTCCGTGTGGCCTTTCTATATGTATTCTCGTATGTCTTCTTGTACCAACACGACAATAAGCATGGTGCAGTCAATATACTAAAGCGCATATACCTGTTGACAAATTCAAATTTTAAAAATCTGTGGAGATGTTAAAGCAAATAGAAAATTAACCAGTATGTGTTACCTTATACGGATTCATTGTATATGAATTAGCATACAATATACAACCATACAGGTTTGTCATGTATATGAATTATCAGATCCATATTACATGAATTTTCCATATGATATGAATTACCATATTGAATATAACTGTAAAATGTTGTGACTGCTTTCCAGTAATGGTTTATAATAAATGAACTTCCACAGTGTACTGTAGGCTTACTGTATACTCTTGGTGGATAAATTCTGTTTTGGAAGTGTTACCTTACTGTTTTGTTTACAAGATAGTCTATAGGATTGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036109_MULTIEX1-5/6=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.789 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGCTCTGGCTAACATGC
R:
ACTGCACCATGCTTATTGTCGT
Band lengths:
174-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: