RnoEX0053028 @ rn6
Exon Skipping
Gene
ENSRNOG00000002487 | Mbnl3
Description
muscleblind-like splicing regulator 3 [Source:RGD Symbol;Acc:1565834]
Coordinates
chrX:138384912-138392946:-
Coord C1 exon
chrX:138392796-138392946
Coord A exon
chrX:138388573-138388667
Coord C2 exon
chrX:138384912-138385835
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCATGATTTCCTACTGCAAGTGC
3' ss Score
1.5
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GCCCTGCCGCCTGGTGCACTTCAGCTGATACCAAAGAGGTCAGCCCTTGACAAGGTCAATGGTGCCACTCCAGTCTTTAACCCCAGTGTTTTCCACTGCCAACAGGCTCTGGCTAACATGCAGATTCCGCAGCCGGCTTTCATCCCGACAG
Seq A exon
TGCCCATGATGCACGGTGCTACACCTTCCACCATGTCTGCAGCAACACCACCTGCCGGCAACGTTCCCTACGTTCCAACAACTACAGGCAATCAG
Seq C2 exon
TTGAAATATTGAGCAGCAGAGTTACAGAGTATCAGAATCTCTCAACAAGAAACTCCATGTGGCCTTTCTACATATGTTCTCGTATGTCCAACACAACAATAAGCATGGTGCAGTCAATATATTAAAGCACAAATACCTGTTGACAAATTCAAGTTTTAAAAATCTGTGGAGATGTTGAAGCAAATAGAAAATTAACCACTATGTGTTACCTTATTGGATTAATCGTAAATGAATTATCATATAGAATACAACCACACATCTTTGTCATGTATATGAATTATCAGATCCATGTTACATTAATTTTCCCTCTGATAGAAATTGCCACATTGAATATAACCATAAAATATTGTGACTTTTTTCATTAATGATTTATGCTAACTGAACATCCACAGTGTACTGTAGGCTTACTGTATACTCTTGGTGGATAAATTCTGTTTTTGAAGTGTTACCTTACTATTTTGTTTACAAGATAGTCTATTGGATTGATGTAGAATGTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002487-'9-11,'9-9,12-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAGGTCAATGGTGCCAC
R:
AGGCCACATGGAGTTTCTTGT
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]