GgaEX0008588 @ galGal4
Exon Skipping
Gene
ENSGALG00000029157 | MBNL3
Description
muscleblind-like 3 isoform 5 [Source:RefSeq peptide;Acc:NP_001156813]
Coordinates
chr4:3478547-3484691:-
Coord C1 exon
chr4:3484541-3484691
Coord A exon
chr4:3480012-3480106
Coord C2 exon
chr4:3478547-3478620
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCATGGTTCCCTTCCGAAAGTGC
3' ss Score
2.55
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GCCCTGCCGCCTGGTGCACTTCAACCTTTACCAAAGAGGCCAGCACTTGAAAAAAACAATGGTGCCACCACAGTCTTTAACCCAAGCGTTTTCCACTACCAACAGGCTCTAGCCAACATGCAGTTGCAACAGCCTACGTTCATCCCCACAG
Seq A exon
TGCCCATGATGCACGGTGCTACGCCCACCACTGTGTCTGCAGCAACAACTCCTGCCACCAGCGTCCCCTTCGCTGCAACAGCTACCGCCAATCAG
Seq C2 exon
ATATCCCAGTTATCAGTAGATGAACTGAGTAGCAGCATGTTTGTTTCACAGATGTAGAAGTTCCCGATAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029157_MULTIEX1-2/3=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGAGGCCAGCACTTGAA
R:
TCTGTGAAACAAACATGCTGCT
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]