GgaEX0008588 @ galGal3
Exon Skipping
Gene
ENSGALG00000006066 | MBNL3
Description
NA
Coordinates
chr4:3495849-3501993:-
Coord C1 exon
chr4:3501843-3501993
Coord A exon
chr4:3497314-3497408
Coord C2 exon
chr4:3495849-3495922
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCATGGTTCCCTTCCGAAAGTGC
3' ss Score
2.55
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GCCCTGCCGCCTGGTGCACTTCAACCTTTACCAAAGAGGCCAGCACTTGAAAAAAACAATGGTGCCACCACAGTCTTTAACCCAAGCGTTTTCCACTACCAACAGGCTCTAGCCAACATGCAGTTGCAACAGCCTACGTTCATCCCCACAG
Seq A exon
TGCCCATGATGCACGGTGCTACGCCCACCACTGTGTCTGCAGCAACAACTCCTGCCACCAGCGTCCCCTTCGCTGCAACAGCTACCGCCAATCAG
Seq C2 exon
ATATCCCAGTTATCAGTAGATGAACTGAGTAGCAGCATGTTTGTTTCACAGATGTAGAAGTTCCCGATAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006066_MULTIEX1-2/3=C1-3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.657 A=0.953 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGAGGCCAGCACTTGAA
R:
TCTGTGAAACAAACATGCTGCT
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]