GgaEX0008587 @ galGal3
Exon Skipping
Gene
ENSGALG00000006066 | MBNL3
Description
NA
Coordinates
chr4:3497314-3501993:-
Coord C1 exon
chr4:3501843-3501993
Coord A exon
chr4:3499617-3499652
Coord C2 exon
chr4:3497314-3497408
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTTCAATGCATGGTGCGCAGGGT
3' ss Score
3.7
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GCCCTGCCGCCTGGTGCACTTCAACCTTTACCAAAGAGGCCAGCACTTGAAAAAAACAATGGTGCCACCACAGTCTTTAACCCAAGCGTTTTCCACTACCAACAGGCTCTAGCCAACATGCAGTTGCAACAGCCTACGTTCATCCCCACAG
Seq A exon
GGTCAGTTCTGTGCATGACACCCACTGCAAGCGTTG
Seq C2 exon
TGCCCATGATGCACGGTGCTACGCCCACCACTGTGTCTGCAGCAACAACTCCTGCCACCAGCGTCCCCTTCGCTGCAACAGCTACCGCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006066_MULTIEX1-1/3=C1-2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.657 A=0.000 C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAGCGTTTTCCACTACC
R:
CAGGAGTTGTTGCTGCAGACA
Band lengths:
126-162
Functional annotations
There are 2 annotated functions for this event
PMID: 21454535
Inferred from MBNL1 ortholog: The exon 7 region enhances MBNL1-MBNL1 dimerization properties
PMID: 27733504
The presence of alternative ex.54nt always significantly elevated MBNL1 and MBNL2 protein levels (_2... [Show more]
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]