DreEX0045304 @ danRer10
Exon Skipping
Gene
ENSDARG00000052978 | mbnl1
Description
muscleblind-like splicing regulator 1 [Source:ZFIN;Acc:ZDB-GENE-060929-704]
Coordinates
chr2:47967190-47971711:+
Coord C1 exon
chr2:47967190-47967225
Coord A exon
chr2:47970103-47970194
Coord C2 exon
chr2:47971667-47971711
Length
92 bp
Sequences
Splice sites
3' ss Seq
CCATTTTCCCTCTGAAAAAGTTC
3' ss Score
3.4
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GCTCAATATTGTGCATGACCCCTGCAGCGAGCGTGG
Seq A exon
TTCCCATGATGCACGGCGCTTCCCCGGCCGCTGTGTCTGCAGCAACCACATCTGCCACAAGTGTTCCCTTCGCATCTGCATCAGCCAATCAG
Seq C2 exon
GACTCTTCTCTATCAAAGCTGACTACCAACGAATACATGCAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052978_MULTIEX1-4/5=3-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.031 A=0.316 C2=0.517
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAATATTGTGCATGACCCC
R:
ATTGCATGTATTCGTTGGTAGTCA
Band lengths:
79-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]