DreEX0045302 @ danRer10
Exon Skipping
Gene
ENSDARG00000052978 | mbnl1
Description
muscleblind-like splicing regulator 1 [Source:ZFIN;Acc:ZDB-GENE-060929-704]
Coordinates
chr2:47954263-47971711:+
Coord C1 exon
chr2:47954263-47954502
Coord A exon
chr2:47963380-47963533
Coord C2 exon
chr2:47971667-47971711
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTGTGGTCTTTTGGGAGCAGGGA
3' ss Score
4.03
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGTGTCGTGAATACCAGCGTGGCAACTGCTCTCGTGGGGAGACGGACTGCAGGTTTGCCCACCCTGCCGACAGCACAATGATCGACCCCAGCGACAACACAGTGACGGTGTGTATGGATTACATAAAGGGCCGCTGCTCCAGAGACAAGTGCAAATACTTCCACCCTCCTGCTCACCTGCAGGCCAAAATAAAAGCCACCCAACACCAGGTCAATCAGGCCTCGGCCGCCGCTGCCATG
Seq A exon
GGAATTCCTCACAGTGTCATGCCACCTTTACCAAAGCGACCCGCGCTTGAGAAAGCCAACGGTGCCACGAGCATGTTCAGCGCTGGCATGCTCCAGTACCAGCAGGCTTTGGCCAACATGCAGTTTCAGCAGCAGGCAGCCTTTATTCCTTCAG
Seq C2 exon
GACTCTTCTCTATCAAAGCTGACTACCAACGAATACATGCAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052978_MULTIEX1-2/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.166 A=0.247 C2=0.517
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=27.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACGGACTGCAGGTTTG
R:
GCATGTATTCGTTGGTAGTCAGC
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]