GgaEX1035308 @ galGal3
Exon Skipping
Gene
ENSGALG00000010361 | MBNL1_CHICK
Description
NA
Coordinates
chr9:24956679-24963877:-
Coord C1 exon
chr9:24963620-24963877
Coord A exon
chr9:24961024-24961177
Coord C2 exon
chr9:24956679-24956773
Length
154 bp
Sequences
Splice sites
3' ss Seq
TATGCCCATCCACCATTCAGGGA
3' ss Score
7.15
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTGTGTCGGGAGTACCAACGCGGGAACTGCAACCGGGGCGAGAACGACTGCCGGTTCGCTCACCCCGCCGACAGCGCCATGATCGACACCAACGATAACACCGTTACGGTCTGCATGGATTACATCAAAGGGAGATGCTCACGGGAAAAGTGCAAATACTTCCACCCTCCAGCACATCTGCAAGCCAAGATCAAGGCTGCCCAGTACCAGGTTAACCAGGCTGCAGCTGCCCAGGCAGCAGCGACGGCGGCTGCCATG
Seq A exon
GGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAGAGGCCTGCGCTTGAAAAAACCAATGGTGCCACCGCAGTGTTCAATACTGGTATTTTCCAATACCAGCAAGCTCTTGCCAACATGCAGCTGCAGCAGCACACAGCCTTTCTCCCACCAG
Seq C2 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCTGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361-'5-5,'5-3,7-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.302 A=0.375 C2=0.094
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=25.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGACACCAACGATAACACCGT
R:
GGGAACACTTGTGGCAGATGT
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]