BtaEX6002861 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004564 | MBNL1
Description
muscleblind-like splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:6923]
Coordinates
chr1:116244666-116252991:-
Coord C1 exon
chr1:116252953-116252991
Coord A exon
chr1:116252855-116252951
Coord C2 exon
chr1:116244666-116244760
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCCTGCTCTTGAAAAAACCAAAC
3' ss Score
-13.8
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCCCCATTATCCAAAAGAAGGCCTGCTCTTGAAAAAACC
Seq A exon
AACGGTGCCACAGCAGTCTTTAACACTGGTATTTTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAGCAGCATACAGCATTTCTCCCACCAG
Seq C2 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004564-'23-24,'23-19,24-24=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.369 A=0.036 C2=0.819
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATTATCCAAAAGAAGGCCT
R:
CTGGTTGGCTGTGGCTGTTG
Band lengths:
133-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]