DreALTA0016556-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000052978 | mbnl1
Description
muscleblind-like splicing regulator 1 [Source:ZFIN;Acc:ZDB-GENE-060929-704]
Coordinates
chr2:47970103-47971711:+
Coord C1 exon
chr2:47970103-47970194
Coord A exon
chr2:47971667-47971684
Coord C2 exon
chr2:47971685-47971711
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
TTGTCCTTTTTTATTTTGAGGAC
3' ss Score
4.06
Exon sequences
Seq C1 exon
TTCCCATGATGCACGGCGCTTCCCCGGCCGCTGTGTCTGCAGCAACCACATCTGCCACAAGTGTTCCCTTCGCATCTGCATCAGCCAATCAG
Seq A exon
GACTCTTCTCTATCAAAG
Seq C2 exon
CTGACTACCAACGAATACATGCAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052978-15-17,15-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.316 A=NA C2=0.455
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCATGATGCACGGCG
R:
TGCATGTATTCGTTGGTAGTCAG
Band lengths:
115-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]