GgaEX0015493 @ galGal3
Exon Skipping
Gene
ENSGALG00000010361 | MBNL1_CHICK
Description
NA
Coordinates
chr9:24953672-24961177:-
Coord C1 exon
chr9:24961024-24961177
Coord A exon
chr9:24956679-24956773
Coord C2 exon
chr9:24953672-24953746
Length
95 bp
Sequences
Splice sites
3' ss Seq
TATGATTTTCCTTCCGAAAGTTC
3' ss Score
5.3
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
GGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAGAGGCCTGCGCTTGAAAAAACCAATGGTGCCACCGCAGTGTTCAATACTGGTATTTTCCAATACCAGCAAGCTCTTGCCAACATGCAGCTGCAGCAGCACACAGCCTTTCTCCCACCAG
Seq A exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCTGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
Seq C2 exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACACAGATGTAGACATTTTGTCATCAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361_MULTIEX1-2/3=C1-3
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.375 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTACCAAAGAGGCCTGC
R:
GTGGCTAGTCAGATGTTCGGC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]