DreALTA0017702-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000035438 | myhc4
Description
myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
Coordinates
chr5:31626489-31626960:+
Coord C1 exon
chr5:31626489-31626789
Coord A exon
NA
Coord C2 exon
chr5:31626892-31626960
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
3' ss Seq
GTATTTTTATATGAATAGAGACT
3' ss Score
-7.27
Exon sequences
Seq C1 exon
CCTATGGGAATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCTACAGATGTTTCCTTCAAGAACAAGCTGTATGATCAGCATCTTGGCAAGTGCAATGCTTTCCAGAAACCAAGGCCTCAAAAAGGCAAGGCTGAGGCTCACTTCTCCCTGGTCCACTATGCTGGAACTGTGGACTACAACGTTAATGGCTGGCTGGACAAGAACAAGGATCCACTGAACGAGTCTGTTGTGCAGCTGTACCAGAAGTCTTCTGTCAAACTGCTGGCTACTCTCTACCCACCTGTTGTTGAGG
Seq A exon
NA
Seq C2 exon
ACTGGCGGCGGAAAGAAGGGAGGCAAGAAGAAGGGTGGTTCCATGCAGACTGTGTCTTCTCAGTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035438-17-19,17-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.654
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTTGTGCAGCTGTACCA
R:
ACCCTTCTTCTTGCCTCCCTT
Band lengths:
107-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]