DreALTA0017702-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000035438 | myhc4
Description
myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
Coordinates
chr5:31626489-31626960:+
Coord C1 exon
chr5:31626489-31626789
Coord A exon
chr5:31626884-31626891
Coord C2 exon
chr5:31626892-31626960
Length
8 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
3' ss Seq
AATCCTATGTATTTTTATATGAA
3' ss Score
-0.73
Exon sequences
Seq C1 exon
CCTATGGGAATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCTACAGATGTTTCCTTCAAGAACAAGCTGTATGATCAGCATCTTGGCAAGTGCAATGCTTTCCAGAAACCAAGGCCTCAAAAAGGCAAGGCTGAGGCTCACTTCTCCCTGGTCCACTATGCTGGAACTGTGGACTACAACGTTAATGGCTGGCTGGACAAGAACAAGGATCCACTGAACGAGTCTGTTGTGCAGCTGTACCAGAAGTCTTCTGTCAAACTGCTGGCTACTCTCTACCCACCTGTTGTTGAGG
Seq A exon
GAATAGAG
Seq C2 exon
ACTGGCGGCGGAAAGAAGGGAGGCAAGAAGAAGGGTGGTTCCATGCAGACTGTGTCTTCTCAGTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035438-17-19,17-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.654
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTTGTGCAGCTGTACCA
R:
ACCCTTCTTCTTGCCTCCCTT
Band lengths:
107-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]