DreALTA0018516-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20504042-20504711:-
Coord C1 exon
chr24:20504510-20504711
Coord A exon
NA
Coord C2 exon
chr24:20504042-20504200
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CGACTCTTCCTGATTTACAGTCA
3' ss Score
6.08
Exon sequences
Seq C1 exon
TTCTTCAAGGCAAACTGAGAAAAGCATTCTATTCTGAGGATGACTCTCAGAGTTCCTCTGAGTCTTTATCTGAGCATTCCTCACTAGAAGAAGAGCCTACATCTCGAAAGAGGAAAAAAAGCTCAAAGAGTAAACATGCAAAGAGAAGCAGAAGAGAGGCAAAGAAGGACAGAGAGACTGTTAAAACTGCAGGACCCGCAAG
Seq A exon
NA
Seq C2 exon
TCATGCTGAGGGCGAGATGGCAGAGGAAAATGATGGTGAAGCTGAACAGAATGTGAAAAGGGAGAAGCCTGTGGTCCGACCAGAAGAGATCCCACCTGTGCCAGAAAACCGTTTCCTGCTCCGCAGAGACATGCCTACCCAGGAGGAGGCAATAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097-15-14,15-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAACTGCAGGACCCGCAAG
R:
AGGTGGGATCTCTTCTGGTCG
Band lengths:
118-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]