GgaALTA0002670-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1857555-1858117:+
Coord C1 exon
chr2:1857555-1857777
Coord A exon
NA
Coord C2 exon
chr2:1858051-1858117
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGACT
5' ss Score
3.33
3' ss Seq
TACTTTTTTCCTCTTAGCAGCCT
3' ss Score
6
Exon sequences
Seq C1 exon
CTTTGGAGAAGAAGAAGAAAGTCTGTTCTGACTCCGAAGCTTCAGACTCCTCCTCCAGTGGATCAGACCCTTCAGAAACCTCGTCTGAAAGTGAAGCTGAAGATGAAAGAAGCAGAAGAAGAAAGCGTAAAAGAAGAGCTAAAACCAAACAGTCAAGAAAACGGAGGAAGGAAGAGAGGAAGAAAGAGGATCTGAGAAGCAAGCGAGCCTCAAACCAAAGATG
Seq A exon
NA
Seq C2 exon
CCTTTCTGACAAGAGCGATGTAACAGAAAAAGCAGTGGATGTCAGCACAAAGAGGGATAAGCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-10-15,10-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGAGAAGCAAGCGAGC
R:
CCCTCTTTGTGCTGACATCCA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]