DreALTA0018777-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000003165 | nr2f6b
Description
nuclear receptor subfamily 2, group F, member 6b [Source:ZFIN;Acc:ZDB-GENE-040426-2351]
Coordinates
chr11:6118366-6120122:+
Coord C1 exon
chr11:6118366-6118610
Coord A exon
chr11:6119842-6119871
Coord C2 exon
chr11:6119872-6120122
Length
30 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CGTGTTTTTTTCCCCCTCAGACT
3' ss Score
10.81
Exon sequences
Seq C1 exon
CCGCTACTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAGAGCGAAGCTTGTTGGCCAGTCACCACAGACGCTCGGGTCAGCTGTCTCTCCTGACCGCTGGATCTCATGATTTACTGATGAATGGAGAAAGGCAAGGGACGGGAAGCAGCAAATGGTTAAAAGAGCTTTGCTTTGGCTCCTAGGAATGCTGAGGCCCTGGAGACCATACAGCTGGACACACCGGCACTAACAAAACAAG
Seq A exon
ACTCTGACTTCTTCGGCTTACTGTCTGCAG
Seq C2 exon
CTTAAAGGGATTCGCTCCAGGGCGGCTCTGAATTCTCGACGCAGGAAGGTTTCTCGAGCAGCTCCTGCTGGTGTACACAGAGATGGCCATGGTGAGCGGGGGATGGGCCAACCCCAATGGCAGTGCTAATGGACTCGGTGAGAAAGGTTACCTGCGGGGGGAGGAGGAGGGAAGCTCGCCCCAGGCAGGGAACAGCGATGTGGAAGGTGGCGAGGAGGACAAGGCCTGCGTGGTGGACTGTGTTGTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003165-0-5,0-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.269
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0010513=zf-C4=PU(55.7=43.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACACCGGCACTAACAAA
R:
GCCATCTCTGTGTACACCAGC
Band lengths:
113-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]